National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G H I K L M N P Q R S T V Y
*     2                                    
-     117                                    
?                                          
A     6 1                           1   2  
C     3   1                                
D     3                                   1
F     12       1         1                  
G     3                                    
H                                          
I     9                                    
K                                          
L     12       1                            
M     6                                    
N     16             1 1     1              
P     3                       1     1      
Q 1   3           1                        
R     6   1                       1        
S     6       1                            
T     6             1                 1    
V     12                 2                  
Y     9                                   1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Germany 29558 A 4463 4463
1 Germany 29559 T 4463 4463
2 Germany 29560 G 4463 4463
3 Germany 29561 G 4463 4463
4 Germany 29562 G 4463 4463
5 Germany 29563 C 4463 4463
6 Germany 29564 T 4463 4463
7 Germany 29565 A 4463 4463
8 Germany 29566 T 4463 4463
9 Germany 29567 A 4463 4463
10 Germany 29568 T 4463 4463
11 Germany 29569 A 4463 4463
12 Germany 29570 A 4463 4463
13 Germany 29571 A 4463 4463
14 Germany 29572 C 4463 4463
15 Germany 29573 G 4463 4463
16 Germany 29574 T 4463 4463
17 Germany 29575 T 4463 4463
18 Germany 29576 T 4463 4463
19 Germany 29577 T 4463 4463
20 Germany 29578 C 4463 4463
21 Germany 29579 G 4463 4463
22 Germany 29580 C T 4463 4462 Ala8Val
23 Germany 29581 T C 4463 4458 Ala8Ala
24 Germany 29582 T C 4463 4459 Phe9Leu
25 Germany 29583 T 4463 4463
26 Germany 29584 T 4463 4460
27 Germany 29585 C T 4463 4456 Pro10Ser
28 Germany 29586 C 4463 4463
29 Germany 29587 G A 4463 4462 Pro10Pro
30 Germany 29588 T 4463 4463
31 Germany 29589 T 4463 4463
32 Germany 29590 T 4463 4463
33 Germany 29591 A 4463 4463
34 Germany 29592 C 4463 4463
35 Germany 29593 G T 4463 4461 Thr12Thr
36 Germany 29594 A 4463 4463
37 Germany 29595 T 4463 4463
38 Germany 29596 A 4463 4463
39 Germany 29597 T 4463 4463
40 Germany 29598 A 4463 4462
41 Germany 29599 T 4463 4462
42 Germany 29600 A 4463 4462
43 Germany 29601 G 4463 4462
44 Germany 29602 T 4463 4462
45 Germany 29603 C 4463 4462
46 Germany 29604 T 4463 4462
47 Germany 29605 A 4463 4462
48 Germany 29606 C 4463 4462
49 Germany 29607 T 4463 4462
50 Germany 29608 C 4463 4461
51 Germany 29609 T 4463 4461
52 Germany 29610 T 4463 4461
53 Germany 29611 G 4463 4461
54 Germany 29612 T 4463 4461
55 Germany 29613 G 4463 4461
56 Germany 29614 C T 4463 4443 Cys19Cys
57 Germany 29615 A 4463 4461
58 Germany 29616 G 4463 4461
59 Germany 29617 A G 4463 4460 Arg20Arg
60 Germany 29618 A 4463 4461
61 Germany 29619 T 4463 4461
62 Germany 29620 G 4463 4461
63 Germany 29621 A 4463 4461
64 Germany 29622 A 4463 4461
65 Germany 29623 T 4463 4461
66 Germany 29624 T 4463 4463
67 Germany 29625 C T 4463 4461 Ser23Phe
68 Germany 29626 T 4463 4463
69 Germany 29627 C T 4463 4450 Arg24Cys
70 Germany 29628 G 4463 4463
71 Germany 29629 T 4463 4462
72 Germany 29630 A 4463 4462
73 Germany 29631 A 4463 4463
74 Germany 29632 C T 4463 4462 Asn25Asn
75 Germany 29633 T 4463 4463
76 Germany 29634 A 4463 4463
77 Germany 29635 C T 4463 4456 Tyr26Tyr
78 Germany 29636 A 4463 4463
79 Germany 29637 T 4463 4463
80 Germany 29638 A 4463 4463
81 Germany 29639 G T 4463 4462 Ala28Ser
82 Germany 29640 C T 4463 4459 Ala28Val
83 Germany 29641 A 4463 4463
84 Germany 29642 C T 4463 4461 Gln29*
85 Germany 29643 A 4463 4463
86 Germany 29644 A T 4463 4462 Gln29His
87 Germany 29645 G T 4463 3984 Val30Leu
88 Germany 29646 T 4463 4463
89 Germany 29647 A 4463 4463
90 Germany 29648 G T 4463 4451 Asp31Tyr
91 Germany 29649 A 4463 4463
92 Germany 29650 T 4463 4463
93 Germany 29651 G T 4463 4458 Val32Leu
94 Germany 29652 T 4463 4463
95 Germany 29653 A 4463 4463
96 Germany 29654 G 4463 4463
97 Germany 29655 T 4463 4463
98 Germany 29656 T 4463 4463
99 Germany 29657 A 4463 4463
100 Germany 29658 A T 4463 4462 Asn34Ile
101 Germany 29659 C A 4463 4457 Asn34Lys
102 Germany 29660 T 4463 4463
103 Germany 29661 T 4463 4463
104 Germany 29662 T C 4463 4462 Phe35Phe
105 Germany 29663 A 4463 4463
106 Germany 29664 A 4463 4463
107 Germany 29665 T 4460 4460
108 Germany 29666 C T 4355 4351 Leu37Phe
109 Germany 29667 T 4344 4344
110 Germany 29668 C 4344 4344
111 Germany 29669 A 4344 4344
112 Germany 29670 C T 4344 4342 Thr38Ile
113 Germany 29671 A 4344 4344
114 Germany 29672 T 4344 4344
115 Germany 29673 A 4344 4344
116 Germany 29674 G 4344 4344