National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Georgia 29558 A 24 24
1 Georgia 29559 T 24 24
2 Georgia 29560 G 24 24
3 Georgia 29561 G 24 24
4 Georgia 29562 G 24 24
5 Georgia 29563 C 24 24
6 Georgia 29564 T 24 24
7 Georgia 29565 A 24 24
8 Georgia 29566 T 24 24
9 Georgia 29567 A 24 24
10 Georgia 29568 T 24 24
11 Georgia 29569 A 24 24
12 Georgia 29570 A 24 24
13 Georgia 29571 A 24 24
14 Georgia 29572 C 24 24
15 Georgia 29573 G 24 24
16 Georgia 29574 T 24 24
17 Georgia 29575 T 24 24
18 Georgia 29576 T 24 24
19 Georgia 29577 T 24 24
20 Georgia 29578 C 24 24
21 Georgia 29579 G 24 24
22 Georgia 29580 C 24 24
23 Georgia 29581 T 24 24
24 Georgia 29582 T 24 24
25 Georgia 29583 T 24 24
26 Georgia 29584 T 24 24
27 Georgia 29585 C 24 24
28 Georgia 29586 C 24 24
29 Georgia 29587 G 24 24
30 Georgia 29588 T 24 24
31 Georgia 29589 T 24 24
32 Georgia 29590 T 24 24
33 Georgia 29591 A 24 24
34 Georgia 29592 C 24 24
35 Georgia 29593 G 24 24
36 Georgia 29594 A 24 24
37 Georgia 29595 T 24 24
38 Georgia 29596 A 24 24
39 Georgia 29597 T 24 24
40 Georgia 29598 A 24 24
41 Georgia 29599 T 24 24
42 Georgia 29600 A 24 24
43 Georgia 29601 G 24 24
44 Georgia 29602 T 24 24
45 Georgia 29603 C 24 24
46 Georgia 29604 T 24 24
47 Georgia 29605 A 24 24
48 Georgia 29606 C 24 24
49 Georgia 29607 T 24 24
50 Georgia 29608 C 24 24
51 Georgia 29609 T 24 24
52 Georgia 29610 T 24 24
53 Georgia 29611 G 24 24
54 Georgia 29612 T 24 24
55 Georgia 29613 G 24 24
56 Georgia 29614 C 24 24
57 Georgia 29615 A 24 24
58 Georgia 29616 G 24 24
59 Georgia 29617 A 24 24
60 Georgia 29618 A 24 24
61 Georgia 29619 T 24 24
62 Georgia 29620 G 24 24
63 Georgia 29621 A 24 24
64 Georgia 29622 A 24 24
65 Georgia 29623 T 24 24
66 Georgia 29624 T 24 24
67 Georgia 29625 C 24 24
68 Georgia 29626 T 24 24
69 Georgia 29627 C 24 24
70 Georgia 29628 G 24 24
71 Georgia 29629 T 24 24
72 Georgia 29630 A 24 24
73 Georgia 29631 A 24 24
74 Georgia 29632 C 24 24
75 Georgia 29633 T 24 24
76 Georgia 29634 A 24 24
77 Georgia 29635 C 24 24
78 Georgia 29636 A 24 24
79 Georgia 29637 T 24 24
80 Georgia 29638 A 24 24
81 Georgia 29639 G 24 24
82 Georgia 29640 C 24 24
83 Georgia 29641 A 24 24
84 Georgia 29642 C 24 24
85 Georgia 29643 A 24 24
86 Georgia 29644 A 24 24
87 Georgia 29645 G 24 24
88 Georgia 29646 T 24 24
89 Georgia 29647 A 24 24
90 Georgia 29648 G 24 24
91 Georgia 29649 A 24 24
92 Georgia 29650 T 24 24
93 Georgia 29651 G 24 24
94 Georgia 29652 T 24 24
95 Georgia 29653 A 24 24
96 Georgia 29654 G 24 24
97 Georgia 29655 T 24 24
98 Georgia 29656 T 24 24
99 Georgia 29657 A 24 24
100 Georgia 29658 A 24 24
101 Georgia 29659 C 24 24
102 Georgia 29660 T 24 24
103 Georgia 29661 T 24 24
104 Georgia 29662 T 24 24
105 Georgia 29663 A 24 24
106 Georgia 29664 A 24 24
107 Georgia 29665 T 24 24
108 Georgia 29666 C 24 24
109 Georgia 29667 T 24 24
110 Georgia 29668 C 24 24
111 Georgia 29669 A 24 24
112 Georgia 29670 C 24 24
113 Georgia 29671 A 24 24
114 Georgia 29672 T 24 24
115 Georgia 29673 A 24 24
116 Georgia 29674 G 24 24