National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                   1            
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Gambia 29558 A 412 412
1 Gambia 29559 T 412 412
2 Gambia 29560 G 412 412
3 Gambia 29561 G 412 412
4 Gambia 29562 G 412 412
5 Gambia 29563 C 412 412
6 Gambia 29564 T 412 412
7 Gambia 29565 A 412 412
8 Gambia 29566 T 412 412
9 Gambia 29567 A 412 412
10 Gambia 29568 T 412 412
11 Gambia 29569 A 412 412
12 Gambia 29570 A 412 412
13 Gambia 29571 A 412 412
14 Gambia 29572 C 412 412
15 Gambia 29573 G 412 412
16 Gambia 29574 T 412 412
17 Gambia 29575 T 412 412
18 Gambia 29576 T 412 412
19 Gambia 29577 T 412 412
20 Gambia 29578 C 412 412
21 Gambia 29579 G 412 412
22 Gambia 29580 C 412 412
23 Gambia 29581 T 412 412
24 Gambia 29582 T 412 412
25 Gambia 29583 T 412 412
26 Gambia 29584 T 412 412
27 Gambia 29585 C 412 412
28 Gambia 29586 C 412 412
29 Gambia 29587 G T 412 410 Pro10Pro
30 Gambia 29588 T 412 412
31 Gambia 29589 T 412 412
32 Gambia 29590 T 412 412
33 Gambia 29591 A 412 412
34 Gambia 29592 C 412 412
35 Gambia 29593 G 412 412
36 Gambia 29594 A 412 412
37 Gambia 29595 T 412 412
38 Gambia 29596 A 412 412
39 Gambia 29597 T 412 412
40 Gambia 29598 A 412 412
41 Gambia 29599 T 412 412
42 Gambia 29600 A 412 412
43 Gambia 29601 G 412 412
44 Gambia 29602 T 412 412
45 Gambia 29603 C 412 412
46 Gambia 29604 T 412 412
47 Gambia 29605 A 412 412
48 Gambia 29606 C 412 412
49 Gambia 29607 T 412 412
50 Gambia 29608 C 412 412
51 Gambia 29609 T 412 412
52 Gambia 29610 T 412 412
53 Gambia 29611 G 412 412
54 Gambia 29612 T 412 412
55 Gambia 29613 G 412 412
56 Gambia 29614 C 412 412
57 Gambia 29615 A 412 412
58 Gambia 29616 G 412 412
59 Gambia 29617 A 412 412
60 Gambia 29618 A 412 412
61 Gambia 29619 T 412 412
62 Gambia 29620 G 412 412
63 Gambia 29621 A 412 412
64 Gambia 29622 A 412 412
65 Gambia 29623 T 412 412
66 Gambia 29624 T 412 412
67 Gambia 29625 C 412 412
68 Gambia 29626 T 412 412
69 Gambia 29627 C 412 412
70 Gambia 29628 G 412 412
71 Gambia 29629 T 412 412
72 Gambia 29630 A 412 412
73 Gambia 29631 A 412 412
74 Gambia 29632 C 412 412
75 Gambia 29633 T 412 412
76 Gambia 29634 A 412 412
77 Gambia 29635 C 412 412
78 Gambia 29636 A 412 412
79 Gambia 29637 T 412 412
80 Gambia 29638 A 412 412
81 Gambia 29639 G 412 412
82 Gambia 29640 C 412 412
83 Gambia 29641 A 412 412
84 Gambia 29642 C 412 412
85 Gambia 29643 A 412 412
86 Gambia 29644 A 412 412
87 Gambia 29645 G 412 412
88 Gambia 29646 T 412 412
89 Gambia 29647 A 412 412
90 Gambia 29648 G 412 412
91 Gambia 29649 A 412 412
92 Gambia 29650 T 412 412
93 Gambia 29651 G 412 412
94 Gambia 29652 T 412 412
95 Gambia 29653 A 412 412
96 Gambia 29654 G 412 412
97 Gambia 29655 T 412 412
98 Gambia 29656 T 412 412
99 Gambia 29657 A 412 412
100 Gambia 29658 A 412 412
101 Gambia 29659 C 412 412
102 Gambia 29660 T 412 412
103 Gambia 29661 T 412 412
104 Gambia 29662 T 412 412
105 Gambia 29663 A 412 412
106 Gambia 29664 A 412 412
107 Gambia 29665 T 412 412
108 Gambia 29666 C 362 361
109 Gambia 29667 T 362 361
110 Gambia 29668 C 362 362
111 Gambia 29669 A 362 362
112 Gambia 29670 C 362 362
113 Gambia 29671 A 362 362
114 Gambia 29672 T 362 362
115 Gambia 29673 A 362 362
116 Gambia 29674 G 362 362