National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Gabon 29558 A 4 4
1 Gabon 29559 T 4 4
2 Gabon 29560 G 4 4
3 Gabon 29561 G 4 4
4 Gabon 29562 G 4 4
5 Gabon 29563 C 4 4
6 Gabon 29564 T 4 4
7 Gabon 29565 A 4 4
8 Gabon 29566 T 4 4
9 Gabon 29567 A 4 4
10 Gabon 29568 T 4 4
11 Gabon 29569 A 4 4
12 Gabon 29570 A 4 4
13 Gabon 29571 A 4 4
14 Gabon 29572 C 4 4
15 Gabon 29573 G 4 4
16 Gabon 29574 T 4 4
17 Gabon 29575 T 4 4
18 Gabon 29576 T 4 4
19 Gabon 29577 T 4 4
20 Gabon 29578 C 4 4
21 Gabon 29579 G 4 4
22 Gabon 29580 C 4 4
23 Gabon 29581 T 4 4
24 Gabon 29582 T 4 4
25 Gabon 29583 T 4 4
26 Gabon 29584 T 4 4
27 Gabon 29585 C 4 4
28 Gabon 29586 C 4 4
29 Gabon 29587 G 4 4
30 Gabon 29588 T 4 4
31 Gabon 29589 T 4 4
32 Gabon 29590 T 4 4
33 Gabon 29591 A 4 4
34 Gabon 29592 C 4 4
35 Gabon 29593 G 4 4
36 Gabon 29594 A 4 4
37 Gabon 29595 T 4 4
38 Gabon 29596 A 4 4
39 Gabon 29597 T 4 4
40 Gabon 29598 A 4 4
41 Gabon 29599 T 4 4
42 Gabon 29600 A 4 4
43 Gabon 29601 G 4 4
44 Gabon 29602 T 4 4
45 Gabon 29603 C 4 4
46 Gabon 29604 T 4 4
47 Gabon 29605 A 4 4
48 Gabon 29606 C 4 4
49 Gabon 29607 T 4 4
50 Gabon 29608 C 4 4
51 Gabon 29609 T 4 4
52 Gabon 29610 T 4 4
53 Gabon 29611 G 4 4
54 Gabon 29612 T 4 4
55 Gabon 29613 G 4 4
56 Gabon 29614 C 4 4
57 Gabon 29615 A 4 4
58 Gabon 29616 G 4 4
59 Gabon 29617 A 4 4
60 Gabon 29618 A 4 4
61 Gabon 29619 T 4 4
62 Gabon 29620 G 4 4
63 Gabon 29621 A 4 4
64 Gabon 29622 A 4 4
65 Gabon 29623 T 4 4
66 Gabon 29624 T 4 4
67 Gabon 29625 C 4 4
68 Gabon 29626 T 4 4
69 Gabon 29627 C 4 4
70 Gabon 29628 G 4 4
71 Gabon 29629 T 4 4
72 Gabon 29630 A 4 4
73 Gabon 29631 A 4 4
74 Gabon 29632 C 4 4
75 Gabon 29633 T 4 4
76 Gabon 29634 A 4 4
77 Gabon 29635 C 4 4
78 Gabon 29636 A 4 4
79 Gabon 29637 T 4 4
80 Gabon 29638 A 4 4
81 Gabon 29639 G 4 4
82 Gabon 29640 C 4 4
83 Gabon 29641 A 4 4
84 Gabon 29642 C 4 4
85 Gabon 29643 A 4 4
86 Gabon 29644 A 4 4
87 Gabon 29645 G 4 4
88 Gabon 29646 T 4 4
89 Gabon 29647 A 4 4
90 Gabon 29648 G 4 4
91 Gabon 29649 A 4 4
92 Gabon 29650 T 4 4
93 Gabon 29651 G 4 4
94 Gabon 29652 T 4 4
95 Gabon 29653 A 4 4
96 Gabon 29654 G 4 4
97 Gabon 29655 T 4 4
98 Gabon 29656 T 4 4
99 Gabon 29657 A 4 4
100 Gabon 29658 A 4 4
101 Gabon 29659 C 4 4
102 Gabon 29660 T 4 4
103 Gabon 29661 T 4 4
104 Gabon 29662 T 4 4
105 Gabon 29663 A 4 4
106 Gabon 29664 A 4 4
107 Gabon 29665 T 4 4
108 Gabon 29666 C 4 4
109 Gabon 29667 T 4 4
110 Gabon 29668 C 4 4
111 Gabon 29669 A 4 4
112 Gabon 29670 C 4 4
113 Gabon 29671 A 4 4
114 Gabon 29672 T 4 4
115 Gabon 29673 A 4 4
116 Gabon 29674 G 4 4