National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                             2  
C     3   1                            
D     3                               1
F     12                                
G     3                                
I     9                                
L     12             1     1            
M     6                                
N     16                 1              
P     3                         1      
Q 1   3                       1        
R     6   1         1                  
S     6       1                        
T     6           1                    
V     12             1                  
Y     9   1                           1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 France 29558 A 4152 4152
1 France 29559 T 4154 4154
2 France 29560 G 4156 4155
3 France 29561 G 4157 4156
4 France 29562 G 4157 4157
5 France 29563 C 4157 4157
6 France 29564 T 4157 4156
7 France 29565 A 4169 4169
8 France 29566 T 4169 4169
9 France 29567 A 4169 4169
10 France 29568 T 4169 4169
11 France 29569 A 4169 4169
12 France 29570 A 4169 4169
13 France 29571 A 4169 4168
14 France 29572 C 4169 4169
15 France 29573 G 4169 4169
16 France 29574 T 4169 4166
17 France 29575 T 4169 4166
18 France 29576 T 4169 4168
19 France 29577 T 4169 4168
20 France 29578 C 4169 4169
21 France 29579 G 4169 4168
22 France 29580 C T 4169 4166 Ala8Val
23 France 29581 T 4169 4166
24 France 29582 T 4169 4168
25 France 29583 T 4169 4169
26 France 29584 T 4169 4169
27 France 29585 C T 4169 4167 Pro10Ser
28 France 29586 C 4169 4169
29 France 29587 G 4170 4170
30 France 29588 T 4170 4169
31 France 29589 T 4170 4170
32 France 29590 T 4170 4168
33 France 29591 A 4173 4172
34 France 29592 C 4174 4173
35 France 29593 G 4174 4174
36 France 29594 A 4183 4183
37 France 29595 T 4184 4183
38 France 29596 A 4192 4190
39 France 29597 T 4192 4190
40 France 29598 A G 4193 4186 Tyr14Cys
41 France 29599 T 4193 4191
42 France 29600 A 4192 4188
43 France 29601 G 4200 4199
44 France 29602 T 4199 4196
45 France 29603 C 4197 4194
46 France 29604 T 4194 4191
47 France 29605 A 4187 4182
48 France 29606 C 4190 4184
49 France 29607 T C 4189 4181 Leu17Pro
50 France 29608 C 4196 4193
51 France 29609 T 4192 4188
52 France 29610 T 4179 4171
53 France 29611 G 4179 4171
54 France 29612 T 4177 4169
55 France 29613 G 4177 4170
56 France 29614 C T 4177 4136 Cys19Cys
57 France 29615 A 4173 4165
58 France 29616 G 4175 4167
59 France 29617 A 4175 4165
60 France 29618 A 4174 4164
61 France 29619 T 4173 4163
62 France 29620 G 4172 4165
63 France 29621 A 4172 4165
64 France 29622 A 4172 4165
65 France 29623 T 4172 4166
66 France 29624 T 4172 4165
67 France 29625 C T 4171 4160 Ser23Phe
68 France 29626 T 4171 4165
69 France 29627 C T 4172 4158 Arg24Cys
70 France 29628 G T 4172 4165 Arg24Leu
71 France 29629 T 4174 4169
72 France 29630 A 4174 4170
73 France 29631 A 4174 4169
74 France 29632 C T 4175 4170 Asn25Asn
75 France 29633 T 4174 4172
76 France 29634 A 4173 4172
77 France 29635 C T 4173 4169 Tyr26Tyr
78 France 29636 A 4171 4168
79 France 29637 T 4171 4169
80 France 29638 A 4166 4164
81 France 29639 G 4166 4166
82 France 29640 C T 4166 4164 Ala28Val
83 France 29641 A 4164 4162
84 France 29642 C T 4164 4162 Gln29*
85 France 29643 A G 4157 4153 Gln29Arg
86 France 29644 A 4157 4154
87 France 29645 G T 4157 3874 Val30Leu
88 France 29646 T 4157 4153
89 France 29647 A 4156 4153
90 France 29648 G T 4144 4139 Asp31Tyr
91 France 29649 A 4144 4142
92 France 29650 T 4144 4142
93 France 29651 G 4140 4138
94 France 29652 T 4137 4135
95 France 29653 A 4129 4129
96 France 29654 G 4129 4129
97 France 29655 T 4124 4123
98 France 29656 T 4123 4122
99 France 29657 A 4123 4120
100 France 29658 A 4122 4118
101 France 29659 C 4122 4122
102 France 29660 T 4118 4118
103 France 29661 T 4117 4116
104 France 29662 T 4116 4115
105 France 29663 A 4116 4116
106 France 29664 A 4116 4116
107 France 29665 T 4111 4110
108 France 29666 C 4109 4107
109 France 29667 T 4107 4106
110 France 29668 C T 4103 4102 Leu37Leu
111 France 29669 A 4103 4102
112 France 29670 C T 4102 4101 Thr38Ile
113 France 29671 A 4102 4101
114 France 29672 T 4102 4102
115 France 29673 A 4101 4101
116 France 29674 G 4101 4101