National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3   1                            
D     3                               1
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                         1      
Q     3                                
R     6   1                            
S     6                                
T     6                                
V     12             1                  
Y     9   1                            

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Finland 29558 A 993 993
1 Finland 29559 T 993 993
2 Finland 29560 G 993 993
3 Finland 29561 G 993 993
4 Finland 29562 G 993 993
5 Finland 29563 C 993 993
6 Finland 29564 T 993 993
7 Finland 29565 A 993 993
8 Finland 29566 T 993 993
9 Finland 29567 A 993 993
10 Finland 29568 T 993 993
11 Finland 29569 A 993 993
12 Finland 29570 A 993 993
13 Finland 29571 A 993 993
14 Finland 29572 C 993 993
15 Finland 29573 G 993 993
16 Finland 29574 T 993 993
17 Finland 29575 T 993 993
18 Finland 29576 T 993 993
19 Finland 29577 T 993 993
20 Finland 29578 C 993 993
21 Finland 29579 G 993 993
22 Finland 29580 C 993 993
23 Finland 29581 T 993 993
24 Finland 29582 T 993 993
25 Finland 29583 T 993 993
26 Finland 29584 T 993 993
27 Finland 29585 C T 993 992 Pro10Ser
28 Finland 29586 C 993 993
29 Finland 29587 G 993 993
30 Finland 29588 T 993 993
31 Finland 29589 T 993 993
32 Finland 29590 T 993 993
33 Finland 29591 A 993 993
34 Finland 29592 C 993 993
35 Finland 29593 G 993 993
36 Finland 29594 A 993 993
37 Finland 29595 T 993 993
38 Finland 29596 A 993 993
39 Finland 29597 T 993 993
40 Finland 29598 A G 993 991 Tyr14Cys
41 Finland 29599 T 993 993
42 Finland 29600 A 993 993
43 Finland 29601 G 993 993
44 Finland 29602 T 993 993
45 Finland 29603 C 993 993
46 Finland 29604 T 993 993
47 Finland 29605 A 993 993
48 Finland 29606 C 993 993
49 Finland 29607 T 993 993
50 Finland 29608 C 993 993
51 Finland 29609 T 993 993
52 Finland 29610 T 993 993
53 Finland 29611 G 993 993
54 Finland 29612 T 993 993
55 Finland 29613 G 993 993
56 Finland 29614 C T 993 991 Cys19Cys
57 Finland 29615 A 993 993
58 Finland 29616 G 993 993
59 Finland 29617 A 993 993
60 Finland 29618 A 993 993
61 Finland 29619 T 993 993
62 Finland 29620 G 993 993
63 Finland 29621 A 993 993
64 Finland 29622 A 993 993
65 Finland 29623 T 992 992
66 Finland 29624 T 992 992
67 Finland 29625 C 992 992
68 Finland 29626 T 992 992
69 Finland 29627 C T 992 991 Arg24Cys
70 Finland 29628 G 992 992
71 Finland 29629 T 992 992
72 Finland 29630 A 992 992
73 Finland 29631 A 992 992
74 Finland 29632 C 992 992
75 Finland 29633 T 992 992
76 Finland 29634 A 992 992
77 Finland 29635 C 992 992
78 Finland 29636 A 992 992
79 Finland 29637 T 992 992
80 Finland 29638 A 992 992
81 Finland 29639 G 992 992
82 Finland 29640 C 992 992
83 Finland 29641 A 991 991
84 Finland 29642 C 991 991
85 Finland 29643 A 991 991
86 Finland 29644 A 991 991
87 Finland 29645 G T 991 982 Val30Leu
88 Finland 29646 T 991 991
89 Finland 29647 A 991 991
90 Finland 29648 G T 991 990 Asp31Tyr
91 Finland 29649 A 991 991
92 Finland 29650 T 991 991
93 Finland 29651 G 991 991
94 Finland 29652 T 991 991
95 Finland 29653 A 991 991
96 Finland 29654 G 991 991
97 Finland 29655 T 991 991
98 Finland 29656 T 991 991
99 Finland 29657 A 991 991
100 Finland 29658 A 991 991
101 Finland 29659 C 991 991
102 Finland 29660 T 991 991
103 Finland 29661 T 991 991
104 Finland 29662 T 991 991
105 Finland 29663 A 991 991
106 Finland 29664 A 991 991
107 Finland 29665 T 991 991
108 Finland 29666 C 991 991
109 Finland 29667 T 991 991
110 Finland 29668 C 991 991
111 Finland 29669 A 991 991
112 Finland 29670 C 991 991
113 Finland 29671 A 991 991
114 Finland 29672 T 991 991
115 Finland 29673 A 991 991
116 Finland 29674 G 991 991