National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6       1                        
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Estonia 29558 A 20 20
1 Estonia 29559 T 20 20
2 Estonia 29560 G 20 20
3 Estonia 29561 G 20 20
4 Estonia 29562 G 20 20
5 Estonia 29563 C 20 20
6 Estonia 29564 T 20 20
7 Estonia 29565 A 20 20
8 Estonia 29566 T 20 20
9 Estonia 29567 A 20 20
10 Estonia 29568 T 20 20
11 Estonia 29569 A 20 20
12 Estonia 29570 A 20 20
13 Estonia 29571 A 20 20
14 Estonia 29572 C 20 20
15 Estonia 29573 G 20 20
16 Estonia 29574 T 20 20
17 Estonia 29575 T 20 20
18 Estonia 29576 T 20 20
19 Estonia 29577 T 20 20
20 Estonia 29578 C 20 20
21 Estonia 29579 G 20 20
22 Estonia 29580 C 20 20
23 Estonia 29581 T 20 20
24 Estonia 29582 T 20 20
25 Estonia 29583 T 20 20
26 Estonia 29584 T 20 20
27 Estonia 29585 C 20 20
28 Estonia 29586 C 20 20
29 Estonia 29587 G 20 20
30 Estonia 29588 T 20 20
31 Estonia 29589 T 20 20
32 Estonia 29590 T 20 20
33 Estonia 29591 A 20 20
34 Estonia 29592 C 20 20
35 Estonia 29593 G 20 20
36 Estonia 29594 A 20 20
37 Estonia 29595 T 20 20
38 Estonia 29596 A 20 20
39 Estonia 29597 T 20 20
40 Estonia 29598 A 20 20
41 Estonia 29599 T 20 20
42 Estonia 29600 A 20 20
43 Estonia 29601 G 20 20
44 Estonia 29602 T 20 20
45 Estonia 29603 C 20 20
46 Estonia 29604 T 20 20
47 Estonia 29605 A 20 20
48 Estonia 29606 C 20 20
49 Estonia 29607 T 20 20
50 Estonia 29608 C 20 20
51 Estonia 29609 T 20 20
52 Estonia 29610 T 20 20
53 Estonia 29611 G 20 20
54 Estonia 29612 T 20 20
55 Estonia 29613 G 20 20
56 Estonia 29614 C 20 20
57 Estonia 29615 A 20 20
58 Estonia 29616 G 20 20
59 Estonia 29617 A 20 20
60 Estonia 29618 A 20 20
61 Estonia 29619 T 20 20
62 Estonia 29620 G 20 20
63 Estonia 29621 A 20 20
64 Estonia 29622 A 20 20
65 Estonia 29623 T 20 20
66 Estonia 29624 T 20 20
67 Estonia 29625 C T 20 19 Ser23Phe
68 Estonia 29626 T 20 20
69 Estonia 29627 C 20 20
70 Estonia 29628 G 20 20
71 Estonia 29629 T 20 20
72 Estonia 29630 A 20 20
73 Estonia 29631 A 20 20
74 Estonia 29632 C 20 20
75 Estonia 29633 T 20 20
76 Estonia 29634 A 20 20
77 Estonia 29635 C 20 20
78 Estonia 29636 A 20 20
79 Estonia 29637 T 20 20
80 Estonia 29638 A 20 20
81 Estonia 29639 G 20 20
82 Estonia 29640 C 20 20
83 Estonia 29641 A 20 20
84 Estonia 29642 C 20 20
85 Estonia 29643 A 20 20
86 Estonia 29644 A 20 20
87 Estonia 29645 G 20 20
88 Estonia 29646 T 20 20
89 Estonia 29647 A 20 20
90 Estonia 29648 G 20 20
91 Estonia 29649 A 20 20
92 Estonia 29650 T 20 20
93 Estonia 29651 G 20 20
94 Estonia 29652 T 20 20
95 Estonia 29653 A 20 20
96 Estonia 29654 G 20 20
97 Estonia 29655 T 20 20
98 Estonia 29656 T 20 20
99 Estonia 29657 A 20 20
100 Estonia 29658 A 20 20
101 Estonia 29659 C 20 20
102 Estonia 29660 T 20 20
103 Estonia 29661 T 20 20
104 Estonia 29662 T 20 20
105 Estonia 29663 A 20 20
106 Estonia 29664 A 20 20
107 Estonia 29665 T 20 20
108 Estonia 29666 C 20 20
109 Estonia 29667 T 20 20
110 Estonia 29668 C 20 20
111 Estonia 29669 A 20 20
112 Estonia 29670 C 20 20
113 Estonia 29671 A 20 20
114 Estonia 29672 T 20 20
115 Estonia 29673 A 20 20
116 Estonia 29674 G 20 20