National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Equatorial_Guinea 29558 A 95 95
1 Equatorial_Guinea 29559 T 95 95
2 Equatorial_Guinea 29560 G 95 95
3 Equatorial_Guinea 29561 G 95 95
4 Equatorial_Guinea 29562 G 95 95
5 Equatorial_Guinea 29563 C 95 95
6 Equatorial_Guinea 29564 T 95 95
7 Equatorial_Guinea 29565 A 95 95
8 Equatorial_Guinea 29566 T 95 95
9 Equatorial_Guinea 29567 A 95 95
10 Equatorial_Guinea 29568 T 95 95
11 Equatorial_Guinea 29569 A 95 95
12 Equatorial_Guinea 29570 A 95 95
13 Equatorial_Guinea 29571 A 95 95
14 Equatorial_Guinea 29572 C 95 95
15 Equatorial_Guinea 29573 G 95 95
16 Equatorial_Guinea 29574 T 95 95
17 Equatorial_Guinea 29575 T 95 95
18 Equatorial_Guinea 29576 T 95 95
19 Equatorial_Guinea 29577 T 95 95
20 Equatorial_Guinea 29578 C 95 95
21 Equatorial_Guinea 29579 G 95 95
22 Equatorial_Guinea 29580 C 95 95
23 Equatorial_Guinea 29581 T 95 95
24 Equatorial_Guinea 29582 T 95 95
25 Equatorial_Guinea 29583 T 95 95
26 Equatorial_Guinea 29584 T 95 95
27 Equatorial_Guinea 29585 C 95 95
28 Equatorial_Guinea 29586 C 95 95
29 Equatorial_Guinea 29587 G 95 95
30 Equatorial_Guinea 29588 T 95 95
31 Equatorial_Guinea 29589 T 95 95
32 Equatorial_Guinea 29590 T 95 95
33 Equatorial_Guinea 29591 A 95 95
34 Equatorial_Guinea 29592 C 95 95
35 Equatorial_Guinea 29593 G 95 95
36 Equatorial_Guinea 29594 A 95 95
37 Equatorial_Guinea 29595 T 95 95
38 Equatorial_Guinea 29596 A 95 95
39 Equatorial_Guinea 29597 T 95 95
40 Equatorial_Guinea 29598 A 95 95
41 Equatorial_Guinea 29599 T 95 95
42 Equatorial_Guinea 29600 A 95 95
43 Equatorial_Guinea 29601 G 95 95
44 Equatorial_Guinea 29602 T 95 95
45 Equatorial_Guinea 29603 C 95 95
46 Equatorial_Guinea 29604 T 95 95
47 Equatorial_Guinea 29605 A 95 95
48 Equatorial_Guinea 29606 C 95 95
49 Equatorial_Guinea 29607 T 95 95
50 Equatorial_Guinea 29608 C 95 95
51 Equatorial_Guinea 29609 T 95 95
52 Equatorial_Guinea 29610 T 95 95
53 Equatorial_Guinea 29611 G 95 95
54 Equatorial_Guinea 29612 T 95 95
55 Equatorial_Guinea 29613 G 95 95
56 Equatorial_Guinea 29614 C 95 95
57 Equatorial_Guinea 29615 A 95 95
58 Equatorial_Guinea 29616 G 95 95
59 Equatorial_Guinea 29617 A 95 95
60 Equatorial_Guinea 29618 A 95 95
61 Equatorial_Guinea 29619 T 95 95
62 Equatorial_Guinea 29620 G 95 95
63 Equatorial_Guinea 29621 A 95 95
64 Equatorial_Guinea 29622 A 95 95
65 Equatorial_Guinea 29623 T 95 95
66 Equatorial_Guinea 29624 T 95 95
67 Equatorial_Guinea 29625 C 95 95
68 Equatorial_Guinea 29626 T 95 95
69 Equatorial_Guinea 29627 C 95 95
70 Equatorial_Guinea 29628 G 95 95
71 Equatorial_Guinea 29629 T 95 95
72 Equatorial_Guinea 29630 A 95 95
73 Equatorial_Guinea 29631 A 95 95
74 Equatorial_Guinea 29632 C 95 95
75 Equatorial_Guinea 29633 T 95 95
76 Equatorial_Guinea 29634 A 95 95
77 Equatorial_Guinea 29635 C 95 95
78 Equatorial_Guinea 29636 A 95 95
79 Equatorial_Guinea 29637 T 95 95
80 Equatorial_Guinea 29638 A 95 95
81 Equatorial_Guinea 29639 G 95 95
82 Equatorial_Guinea 29640 C 95 95
83 Equatorial_Guinea 29641 A 95 95
84 Equatorial_Guinea 29642 C 95 95
85 Equatorial_Guinea 29643 A 95 95
86 Equatorial_Guinea 29644 A 95 95
87 Equatorial_Guinea 29645 G 95 95
88 Equatorial_Guinea 29646 T 95 95
89 Equatorial_Guinea 29647 A 95 95
90 Equatorial_Guinea 29648 G 95 95
91 Equatorial_Guinea 29649 A 95 95
92 Equatorial_Guinea 29650 T 95 95
93 Equatorial_Guinea 29651 G 95 95
94 Equatorial_Guinea 29652 T 95 95
95 Equatorial_Guinea 29653 A 95 95
96 Equatorial_Guinea 29654 G 95 95
97 Equatorial_Guinea 29655 T 95 95
98 Equatorial_Guinea 29656 T 95 95
99 Equatorial_Guinea 29657 A 95 95
100 Equatorial_Guinea 29658 A 95 95
101 Equatorial_Guinea 29659 C 95 95
102 Equatorial_Guinea 29660 T 95 95
103 Equatorial_Guinea 29661 T 95 95
104 Equatorial_Guinea 29662 T 94 94
105 Equatorial_Guinea 29663 A 94 94
106 Equatorial_Guinea 29664 A 94 94
107 Equatorial_Guinea 29665 T 94 94
108 Equatorial_Guinea 29666 C 94 94
109 Equatorial_Guinea 29667 T 93 93
110 Equatorial_Guinea 29668 C 93 93
111 Equatorial_Guinea 29669 A 93 93
112 Equatorial_Guinea 29670 C 93 93
113 Equatorial_Guinea 29671 A 93 93
114 Equatorial_Guinea 29672 T 93 93
115 Equatorial_Guinea 29673 A 93 93
116 Equatorial_Guinea 29674 G 93 93