National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3   1                            
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 El_Salvador 29558 A 6 6
1 El_Salvador 29559 T 6 6
2 El_Salvador 29560 G 6 6
3 El_Salvador 29561 G 6 6
4 El_Salvador 29562 G 6 6
5 El_Salvador 29563 C 6 6
6 El_Salvador 29564 T 6 6
7 El_Salvador 29565 A 6 6
8 El_Salvador 29566 T 6 6
9 El_Salvador 29567 A 6 6
10 El_Salvador 29568 T 6 6
11 El_Salvador 29569 A 6 6
12 El_Salvador 29570 A 6 6
13 El_Salvador 29571 A 6 6
14 El_Salvador 29572 C 6 6
15 El_Salvador 29573 G 6 6
16 El_Salvador 29574 T 6 6
17 El_Salvador 29575 T 6 6
18 El_Salvador 29576 T 6 6
19 El_Salvador 29577 T 6 6
20 El_Salvador 29578 C 6 6
21 El_Salvador 29579 G 6 6
22 El_Salvador 29580 C 6 6
23 El_Salvador 29581 T 6 6
24 El_Salvador 29582 T 6 6
25 El_Salvador 29583 T 6 6
26 El_Salvador 29584 T 6 6
27 El_Salvador 29585 C 6 6
28 El_Salvador 29586 C 6 6
29 El_Salvador 29587 G 6 6
30 El_Salvador 29588 T 6 6
31 El_Salvador 29589 T 6 6
32 El_Salvador 29590 T 6 6
33 El_Salvador 29591 A 6 6
34 El_Salvador 29592 C 6 6
35 El_Salvador 29593 G 6 6
36 El_Salvador 29594 A 6 6
37 El_Salvador 29595 T 6 6
38 El_Salvador 29596 A 6 6
39 El_Salvador 29597 T 6 6
40 El_Salvador 29598 A 6 6
41 El_Salvador 29599 T 6 6
42 El_Salvador 29600 A 6 6
43 El_Salvador 29601 G 6 6
44 El_Salvador 29602 T 6 6
45 El_Salvador 29603 C 6 6
46 El_Salvador 29604 T 6 6
47 El_Salvador 29605 A 6 6
48 El_Salvador 29606 C 6 6
49 El_Salvador 29607 T 6 6
50 El_Salvador 29608 C 6 6
51 El_Salvador 29609 T 6 6
52 El_Salvador 29610 T 6 6
53 El_Salvador 29611 G 6 6
54 El_Salvador 29612 T 6 6
55 El_Salvador 29613 G 6 6
56 El_Salvador 29614 C T 6 5 Cys19Cys
57 El_Salvador 29615 A 6 6
58 El_Salvador 29616 G 6 6
59 El_Salvador 29617 A 6 6
60 El_Salvador 29618 A 6 6
61 El_Salvador 29619 T 6 6
62 El_Salvador 29620 G 6 6
63 El_Salvador 29621 A 6 6
64 El_Salvador 29622 A 6 6
65 El_Salvador 29623 T 6 6
66 El_Salvador 29624 T 6 6
67 El_Salvador 29625 C 6 6
68 El_Salvador 29626 T 6 6
69 El_Salvador 29627 C 6 6
70 El_Salvador 29628 G 6 6
71 El_Salvador 29629 T 6 6
72 El_Salvador 29630 A 6 6
73 El_Salvador 29631 A 6 6
74 El_Salvador 29632 C 6 6
75 El_Salvador 29633 T 6 6
76 El_Salvador 29634 A 6 6
77 El_Salvador 29635 C 6 6
78 El_Salvador 29636 A 6 6
79 El_Salvador 29637 T 6 6
80 El_Salvador 29638 A 6 6
81 El_Salvador 29639 G 6 6
82 El_Salvador 29640 C 6 6
83 El_Salvador 29641 A 6 6
84 El_Salvador 29642 C 6 6
85 El_Salvador 29643 A 6 6
86 El_Salvador 29644 A 6 6
87 El_Salvador 29645 G 6 6
88 El_Salvador 29646 T 6 6
89 El_Salvador 29647 A 6 6
90 El_Salvador 29648 G 6 6
91 El_Salvador 29649 A 6 6
92 El_Salvador 29650 T 6 6
93 El_Salvador 29651 G 6 6
94 El_Salvador 29652 T 6 6
95 El_Salvador 29653 A 6 6
96 El_Salvador 29654 G 6 6
97 El_Salvador 29655 T 6 6
98 El_Salvador 29656 T 6 6
99 El_Salvador 29657 A 6 6
100 El_Salvador 29658 A 6 6
101 El_Salvador 29659 C 6 6
102 El_Salvador 29660 T 6 6
103 El_Salvador 29661 T 6 6
104 El_Salvador 29662 T 6 6
105 El_Salvador 29663 A 6 6
106 El_Salvador 29664 A 6 6
107 El_Salvador 29665 T 6 6
108 El_Salvador 29666 C 6 6
109 El_Salvador 29667 T 6 6
110 El_Salvador 29668 C 6 6
111 El_Salvador 29669 A 6 6
112 El_Salvador 29670 C 6 6
113 El_Salvador 29671 A 6 6
114 El_Salvador 29672 T 6 6
115 El_Salvador 29673 A 6 6
116 El_Salvador 29674 G 6 6