National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                             1  
C     3                                
D     3                                
F     12       1     1                  
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6   1                            
S     6                                
T     6           1                    
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Egypt 29558 A 366 366
1 Egypt 29559 T 366 366
2 Egypt 29560 G 366 366
3 Egypt 29561 G 366 366
4 Egypt 29562 G 366 366
5 Egypt 29563 C 366 366
6 Egypt 29564 T 366 366
7 Egypt 29565 A 366 366
8 Egypt 29566 T 366 366
9 Egypt 29567 A 366 366
10 Egypt 29568 T 366 366
11 Egypt 29569 A 366 366
12 Egypt 29570 A 366 365
13 Egypt 29571 A 366 366
14 Egypt 29572 C 366 366
15 Egypt 29573 G 366 366
16 Egypt 29574 T 366 366
17 Egypt 29575 T 366 366
18 Egypt 29576 T 366 366
19 Egypt 29577 T 366 366
20 Egypt 29578 C T,A 366 363 Phe7Leu-p.Phe7Phe
21 Egypt 29579 G 366 366
22 Egypt 29580 C 366 366
23 Egypt 29581 T 366 366
24 Egypt 29582 T 366 366
25 Egypt 29583 T 366 366
26 Egypt 29584 T 366 366
27 Egypt 29585 C 366 366
28 Egypt 29586 C 366 366
29 Egypt 29587 G 366 366
30 Egypt 29588 T 366 366
31 Egypt 29589 T 366 366
32 Egypt 29590 T 366 366
33 Egypt 29591 A 366 366
34 Egypt 29592 C 366 366
35 Egypt 29593 G 366 366
36 Egypt 29594 A 366 366
37 Egypt 29595 T 366 366
38 Egypt 29596 A 366 366
39 Egypt 29597 T 366 366
40 Egypt 29598 A 366 366
41 Egypt 29599 T 366 366
42 Egypt 29600 A 366 366
43 Egypt 29601 G 366 366
44 Egypt 29602 T 366 366
45 Egypt 29603 C 366 366
46 Egypt 29604 T 366 366
47 Egypt 29605 A 366 366
48 Egypt 29606 C 366 366
49 Egypt 29607 T 366 366
50 Egypt 29608 C 366 366
51 Egypt 29609 T 366 366
52 Egypt 29610 T 366 366
53 Egypt 29611 G 366 366
54 Egypt 29612 T 366 366
55 Egypt 29613 G 366 366
56 Egypt 29614 C 366 366
57 Egypt 29615 A 366 366
58 Egypt 29616 G 366 366
59 Egypt 29617 A 366 366
60 Egypt 29618 A 366 366
61 Egypt 29619 T 366 366
62 Egypt 29620 G 366 366
63 Egypt 29621 A 366 366
64 Egypt 29622 A 366 366
65 Egypt 29623 T 366 366
66 Egypt 29624 T 366 366
67 Egypt 29625 C 366 366
68 Egypt 29626 T 366 366
69 Egypt 29627 C T 366 364 Arg24Cys
70 Egypt 29628 G 366 366
71 Egypt 29629 T 366 366
72 Egypt 29630 A 366 366
73 Egypt 29631 A 366 366
74 Egypt 29632 C 366 366
75 Egypt 29633 T 366 366
76 Egypt 29634 A 366 366
77 Egypt 29635 C 366 366
78 Egypt 29636 A 366 366
79 Egypt 29637 T 366 366
80 Egypt 29638 A 366 365
81 Egypt 29639 G 366 366
82 Egypt 29640 C T 366 365 Ala28Val
83 Egypt 29641 A 366 366
84 Egypt 29642 C 366 366
85 Egypt 29643 A 366 366
86 Egypt 29644 A 366 366
87 Egypt 29645 G 366 366
88 Egypt 29646 T 366 366
89 Egypt 29647 A 366 366
90 Egypt 29648 G 366 366
91 Egypt 29649 A 366 366
92 Egypt 29650 T 366 366
93 Egypt 29651 G 366 366
94 Egypt 29652 T 366 366
95 Egypt 29653 A 366 366
96 Egypt 29654 G 366 366
97 Egypt 29655 T 366 366
98 Egypt 29656 T 366 366
99 Egypt 29657 A 366 366
100 Egypt 29658 A 366 366
101 Egypt 29659 C 366 366
102 Egypt 29660 T 366 366
103 Egypt 29661 T 365 365
104 Egypt 29662 T 365 365
105 Egypt 29663 A 365 365
106 Egypt 29664 A 365 365
107 Egypt 29665 T 365 365
108 Egypt 29666 C 365 365
109 Egypt 29667 T 365 365
110 Egypt 29668 C 365 365
111 Egypt 29669 A 365 365
112 Egypt 29670 C T 365 363 Thr38Ile
113 Egypt 29671 A 365 365
114 Egypt 29672 T 365 365
115 Egypt 29673 A 365 365
116 Egypt 29674 G 365 365