National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12       1                        
M     6                                
N     16                 1              
P     3                                
Q 1   3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Ecuador 29558 A 208 208
1 Ecuador 29559 T 208 208
2 Ecuador 29560 G 208 208
3 Ecuador 29561 G 208 208
4 Ecuador 29562 G 208 208
5 Ecuador 29563 C 208 208
6 Ecuador 29564 T 208 208
7 Ecuador 29565 A 208 208
8 Ecuador 29566 T 208 208
9 Ecuador 29567 A 208 208
10 Ecuador 29568 T 208 208
11 Ecuador 29569 A 208 208
12 Ecuador 29570 A 208 208
13 Ecuador 29571 A 208 208
14 Ecuador 29572 C 208 208
15 Ecuador 29573 G 208 208
16 Ecuador 29574 T 208 208
17 Ecuador 29575 T 208 208
18 Ecuador 29576 T 208 208
19 Ecuador 29577 T 208 208
20 Ecuador 29578 C 208 208
21 Ecuador 29579 G 208 208
22 Ecuador 29580 C 208 208
23 Ecuador 29581 T 208 208
24 Ecuador 29582 T 208 208
25 Ecuador 29583 T 208 208
26 Ecuador 29584 T 208 208
27 Ecuador 29585 C 208 208
28 Ecuador 29586 C 208 208
29 Ecuador 29587 G 208 208
30 Ecuador 29588 T 208 208
31 Ecuador 29589 T 208 208
32 Ecuador 29590 T 208 208
33 Ecuador 29591 A 208 208
34 Ecuador 29592 C 208 208
35 Ecuador 29593 G 208 208
36 Ecuador 29594 A 208 208
37 Ecuador 29595 T 208 208
38 Ecuador 29596 A 208 208
39 Ecuador 29597 T 208 208
40 Ecuador 29598 A 208 208
41 Ecuador 29599 T 208 208
42 Ecuador 29600 A 208 208
43 Ecuador 29601 G 208 208
44 Ecuador 29602 T 208 208
45 Ecuador 29603 C 208 208
46 Ecuador 29604 T 208 208
47 Ecuador 29605 A 208 208
48 Ecuador 29606 C 208 208
49 Ecuador 29607 T 208 208
50 Ecuador 29608 C 208 208
51 Ecuador 29609 T 208 208
52 Ecuador 29610 T 208 208
53 Ecuador 29611 G 208 208
54 Ecuador 29612 T 208 208
55 Ecuador 29613 G 208 208
56 Ecuador 29614 C 208 208
57 Ecuador 29615 A 208 208
58 Ecuador 29616 G 208 208
59 Ecuador 29617 A 208 208
60 Ecuador 29618 A 208 208
61 Ecuador 29619 T 208 208
62 Ecuador 29620 G 208 208
63 Ecuador 29621 A 208 208
64 Ecuador 29622 A 208 208
65 Ecuador 29623 T 208 208
66 Ecuador 29624 T 208 208
67 Ecuador 29625 C 208 208
68 Ecuador 29626 T 208 208
69 Ecuador 29627 C 208 208
70 Ecuador 29628 G 208 208
71 Ecuador 29629 T 208 208
72 Ecuador 29630 A 208 208
73 Ecuador 29631 A 208 208
74 Ecuador 29632 C T 208 207 Asn25Asn
75 Ecuador 29633 T 208 208
76 Ecuador 29634 A 208 208
77 Ecuador 29635 C 208 208
78 Ecuador 29636 A 208 208
79 Ecuador 29637 T 208 208
80 Ecuador 29638 A 208 208
81 Ecuador 29639 G 208 208
82 Ecuador 29640 C 208 208
83 Ecuador 29641 A 208 208
84 Ecuador 29642 C T 208 204 Gln29*
85 Ecuador 29643 A 208 208
86 Ecuador 29644 A 208 208
87 Ecuador 29645 G 208 208
88 Ecuador 29646 T 208 208
89 Ecuador 29647 A 208 208
90 Ecuador 29648 G 208 208
91 Ecuador 29649 A 208 208
92 Ecuador 29650 T 208 208
93 Ecuador 29651 G 208 208
94 Ecuador 29652 T 208 208
95 Ecuador 29653 A 208 208
96 Ecuador 29654 G 208 208
97 Ecuador 29655 T 208 208
98 Ecuador 29656 T 208 208
99 Ecuador 29657 A 208 208
100 Ecuador 29658 A 208 208
101 Ecuador 29659 C 208 208
102 Ecuador 29660 T 208 208
103 Ecuador 29661 T 208 208
104 Ecuador 29662 T 208 208
105 Ecuador 29663 A 208 208
106 Ecuador 29664 A 208 208
107 Ecuador 29665 T 208 208
108 Ecuador 29666 C T 205 203 Leu37Phe
109 Ecuador 29667 T 204 204
110 Ecuador 29668 C 201 201
111 Ecuador 29669 A 201 201
112 Ecuador 29670 C 201 201
113 Ecuador 29671 A 201 201
114 Ecuador 29672 T 201 201
115 Ecuador 29673 A 201 201
116 Ecuador 29674 G 201 201