National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12             1                  
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Dominican_Republic 29558 A 8 8
1 Dominican_Republic 29559 T 8 8
2 Dominican_Republic 29560 G 8 8
3 Dominican_Republic 29561 G 8 8
4 Dominican_Republic 29562 G 8 8
5 Dominican_Republic 29563 C 8 8
6 Dominican_Republic 29564 T 8 8
7 Dominican_Republic 29565 A 8 8
8 Dominican_Republic 29566 T 8 8
9 Dominican_Republic 29567 A 8 8
10 Dominican_Republic 29568 T 8 8
11 Dominican_Republic 29569 A 8 8
12 Dominican_Republic 29570 A 8 8
13 Dominican_Republic 29571 A 8 8
14 Dominican_Republic 29572 C 8 8
15 Dominican_Republic 29573 G 8 8
16 Dominican_Republic 29574 T 8 8
17 Dominican_Republic 29575 T 8 8
18 Dominican_Republic 29576 T 8 8
19 Dominican_Republic 29577 T 8 8
20 Dominican_Republic 29578 C 8 8
21 Dominican_Republic 29579 G 8 8
22 Dominican_Republic 29580 C 8 8
23 Dominican_Republic 29581 T 8 8
24 Dominican_Republic 29582 T 8 8
25 Dominican_Republic 29583 T 8 8
26 Dominican_Republic 29584 T 8 8
27 Dominican_Republic 29585 C 8 8
28 Dominican_Republic 29586 C 8 8
29 Dominican_Republic 29587 G 8 8
30 Dominican_Republic 29588 T 8 8
31 Dominican_Republic 29589 T 8 8
32 Dominican_Republic 29590 T 8 8
33 Dominican_Republic 29591 A 8 8
34 Dominican_Republic 29592 C 8 8
35 Dominican_Republic 29593 G 8 8
36 Dominican_Republic 29594 A 8 8
37 Dominican_Republic 29595 T 8 8
38 Dominican_Republic 29596 A 8 8
39 Dominican_Republic 29597 T 8 8
40 Dominican_Republic 29598 A 8 8
41 Dominican_Republic 29599 T 8 8
42 Dominican_Republic 29600 A 8 8
43 Dominican_Republic 29601 G 8 8
44 Dominican_Republic 29602 T 8 8
45 Dominican_Republic 29603 C 8 8
46 Dominican_Republic 29604 T 8 8
47 Dominican_Republic 29605 A 8 8
48 Dominican_Republic 29606 C 8 8
49 Dominican_Republic 29607 T 8 8
50 Dominican_Republic 29608 C A 8 6 Leu17Leu
51 Dominican_Republic 29609 T 8 8
52 Dominican_Republic 29610 T 8 8
53 Dominican_Republic 29611 G 8 8
54 Dominican_Republic 29612 T 8 8
55 Dominican_Republic 29613 G 8 8
56 Dominican_Republic 29614 C 8 8
57 Dominican_Republic 29615 A 8 8
58 Dominican_Republic 29616 G 8 8
59 Dominican_Republic 29617 A 8 8
60 Dominican_Republic 29618 A 8 8
61 Dominican_Republic 29619 T 8 8
62 Dominican_Republic 29620 G 8 8
63 Dominican_Republic 29621 A 8 8
64 Dominican_Republic 29622 A 8 8
65 Dominican_Republic 29623 T 8 8
66 Dominican_Republic 29624 T 8 8
67 Dominican_Republic 29625 C 8 8
68 Dominican_Republic 29626 T 8 8
69 Dominican_Republic 29627 C 8 8
70 Dominican_Republic 29628 G 8 8
71 Dominican_Republic 29629 T 8 8
72 Dominican_Republic 29630 A 8 8
73 Dominican_Republic 29631 A 8 8
74 Dominican_Republic 29632 C 8 8
75 Dominican_Republic 29633 T 8 8
76 Dominican_Republic 29634 A 8 8
77 Dominican_Republic 29635 C 8 8
78 Dominican_Republic 29636 A 8 8
79 Dominican_Republic 29637 T 8 8
80 Dominican_Republic 29638 A 8 8
81 Dominican_Republic 29639 G 8 8
82 Dominican_Republic 29640 C 8 8
83 Dominican_Republic 29641 A 8 8
84 Dominican_Republic 29642 C 8 8
85 Dominican_Republic 29643 A 8 8
86 Dominican_Republic 29644 A 8 8
87 Dominican_Republic 29645 G 8 8
88 Dominican_Republic 29646 T 8 8
89 Dominican_Republic 29647 A 8 8
90 Dominican_Republic 29648 G 8 8
91 Dominican_Republic 29649 A 8 8
92 Dominican_Republic 29650 T 8 8
93 Dominican_Republic 29651 G 8 8
94 Dominican_Republic 29652 T 8 8
95 Dominican_Republic 29653 A 8 8
96 Dominican_Republic 29654 G 8 8
97 Dominican_Republic 29655 T 8 8
98 Dominican_Republic 29656 T 8 8
99 Dominican_Republic 29657 A 8 8
100 Dominican_Republic 29658 A 8 8
101 Dominican_Republic 29659 C 8 8
102 Dominican_Republic 29660 T 8 8
103 Dominican_Republic 29661 T 8 8
104 Dominican_Republic 29662 T 8 8
105 Dominican_Republic 29663 A 8 8
106 Dominican_Republic 29664 A 8 8
107 Dominican_Republic 29665 T 8 8
108 Dominican_Republic 29666 C 8 8
109 Dominican_Republic 29667 T 8 8
110 Dominican_Republic 29668 C 8 8
111 Dominican_Republic 29669 A 8 8
112 Dominican_Republic 29670 C 8 8
113 Dominican_Republic 29671 A 8 8
114 Dominican_Republic 29672 T 8 8
115 Dominican_Republic 29673 A 8 8
116 Dominican_Republic 29674 G 8 8