National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3   1                            
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3             1                  
Q     3                                
R     6   1                            
S     6                                
T     6 1                              
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Czech_Republic 29558 A 602 602
1 Czech_Republic 29559 T 602 602
2 Czech_Republic 29560 G 602 602
3 Czech_Republic 29561 G 602 602
4 Czech_Republic 29562 G 602 602
5 Czech_Republic 29563 C 602 602
6 Czech_Republic 29564 T 602 602
7 Czech_Republic 29565 A 602 602
8 Czech_Republic 29566 T 602 602
9 Czech_Republic 29567 A 602 602
10 Czech_Republic 29568 T 602 602
11 Czech_Republic 29569 A 602 602
12 Czech_Republic 29570 A 602 602
13 Czech_Republic 29571 A 602 602
14 Czech_Republic 29572 C 602 602
15 Czech_Republic 29573 G 602 602
16 Czech_Republic 29574 T 602 602
17 Czech_Republic 29575 T 602 602
18 Czech_Republic 29576 T 602 602
19 Czech_Republic 29577 T 602 602
20 Czech_Republic 29578 C 602 602
21 Czech_Republic 29579 G 602 602
22 Czech_Republic 29580 C 602 602
23 Czech_Republic 29581 T 602 602
24 Czech_Republic 29582 T 602 602
25 Czech_Republic 29583 T 602 602
26 Czech_Republic 29584 T 602 602
27 Czech_Republic 29585 C 602 602
28 Czech_Republic 29586 C T 602 598 Pro10Leu
29 Czech_Republic 29587 G 602 602
30 Czech_Republic 29588 T 602 602
31 Czech_Republic 29589 T 602 602
32 Czech_Republic 29590 T 602 602
33 Czech_Republic 29591 A 602 602
34 Czech_Republic 29592 C 602 602
35 Czech_Republic 29593 G 602 602
36 Czech_Republic 29594 A 602 602
37 Czech_Republic 29595 T 602 602
38 Czech_Republic 29596 A 602 602
39 Czech_Republic 29597 T 602 602
40 Czech_Republic 29598 A 602 602
41 Czech_Republic 29599 T 602 602
42 Czech_Republic 29600 A 602 602
43 Czech_Republic 29601 G 602 602
44 Czech_Republic 29602 T 602 602
45 Czech_Republic 29603 C 602 602
46 Czech_Republic 29604 T 602 602
47 Czech_Republic 29605 A 602 602
48 Czech_Republic 29606 C 602 602
49 Czech_Republic 29607 T 602 602
50 Czech_Republic 29608 C 602 602
51 Czech_Republic 29609 T 602 602
52 Czech_Republic 29610 T 602 602
53 Czech_Republic 29611 G 602 602
54 Czech_Republic 29612 T 602 602
55 Czech_Republic 29613 G 602 602
56 Czech_Republic 29614 C T 602 579 Cys19Cys
57 Czech_Republic 29615 A 602 602
58 Czech_Republic 29616 G 602 602
59 Czech_Republic 29617 A 602 602
60 Czech_Republic 29618 A 602 602
61 Czech_Republic 29619 T 602 602
62 Czech_Republic 29620 G 602 602
63 Czech_Republic 29621 A 602 602
64 Czech_Republic 29622 A 602 602
65 Czech_Republic 29623 T 602 602
66 Czech_Republic 29624 T 602 602
67 Czech_Republic 29625 C 602 602
68 Czech_Republic 29626 T 602 602
69 Czech_Republic 29627 C T 602 600 Arg24Cys
70 Czech_Republic 29628 G 602 602
71 Czech_Republic 29629 T 602 602
72 Czech_Republic 29630 A 602 602
73 Czech_Republic 29631 A 602 602
74 Czech_Republic 29632 C 602 602
75 Czech_Republic 29633 T 602 602
76 Czech_Republic 29634 A 602 602
77 Czech_Republic 29635 C 602 602
78 Czech_Republic 29636 A 602 602
79 Czech_Republic 29637 T 602 602
80 Czech_Republic 29638 A 602 602
81 Czech_Republic 29639 G 602 602
82 Czech_Republic 29640 C 602 602
83 Czech_Republic 29641 A 602 602
84 Czech_Republic 29642 C 602 602
85 Czech_Republic 29643 A 602 602
86 Czech_Republic 29644 A 602 602
87 Czech_Republic 29645 G T 602 597 Val30Leu
88 Czech_Republic 29646 T 602 602
89 Czech_Republic 29647 A 602 602
90 Czech_Republic 29648 G 602 602
91 Czech_Republic 29649 A 602 602
92 Czech_Republic 29650 T 602 602
93 Czech_Republic 29651 G 602 602
94 Czech_Republic 29652 T 602 602
95 Czech_Republic 29653 A 602 602
96 Czech_Republic 29654 G 602 602
97 Czech_Republic 29655 T 602 602
98 Czech_Republic 29656 T 602 602
99 Czech_Republic 29657 A 602 602
100 Czech_Republic 29658 A 602 602
101 Czech_Republic 29659 C 602 602
102 Czech_Republic 29660 T 602 602
103 Czech_Republic 29661 T 602 602
104 Czech_Republic 29662 T 602 602
105 Czech_Republic 29663 A 602 602
106 Czech_Republic 29664 A 602 602
107 Czech_Republic 29665 T 602 602
108 Czech_Republic 29666 C 602 602
109 Czech_Republic 29667 T 602 602
110 Czech_Republic 29668 C 602 602
111 Czech_Republic 29669 A G 602 599 Thr38Ala
112 Czech_Republic 29670 C 602 602
113 Czech_Republic 29671 A 602 602
114 Czech_Republic 29672 T 602 602
115 Czech_Republic 29673 A 602 602
116 Czech_Republic 29674 G 602 602