National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cuba 29558 A 2 2
1 Cuba 29559 T 2 2
2 Cuba 29560 G 2 2
3 Cuba 29561 G 2 2
4 Cuba 29562 G 2 2
5 Cuba 29563 C 2 2
6 Cuba 29564 T 2 2
7 Cuba 29565 A 2 2
8 Cuba 29566 T 2 2
9 Cuba 29567 A 2 2
10 Cuba 29568 T 2 2
11 Cuba 29569 A 2 2
12 Cuba 29570 A 2 2
13 Cuba 29571 A 2 2
14 Cuba 29572 C 2 2
15 Cuba 29573 G 2 2
16 Cuba 29574 T 2 2
17 Cuba 29575 T 2 2
18 Cuba 29576 T 2 2
19 Cuba 29577 T 2 2
20 Cuba 29578 C 2 2
21 Cuba 29579 G 2 2
22 Cuba 29580 C 2 2
23 Cuba 29581 T 2 2
24 Cuba 29582 T 2 2
25 Cuba 29583 T 2 2
26 Cuba 29584 T 2 2
27 Cuba 29585 C 2 2
28 Cuba 29586 C 2 2
29 Cuba 29587 G 2 2
30 Cuba 29588 T 2 2
31 Cuba 29589 T 2 2
32 Cuba 29590 T 2 2
33 Cuba 29591 A 2 2
34 Cuba 29592 C 2 2
35 Cuba 29593 G 2 2
36 Cuba 29594 A 2 2
37 Cuba 29595 T 2 2
38 Cuba 29596 A 2 2
39 Cuba 29597 T 2 2
40 Cuba 29598 A 2 2
41 Cuba 29599 T 2 2
42 Cuba 29600 A 2 2
43 Cuba 29601 G 2 2
44 Cuba 29602 T 2 2
45 Cuba 29603 C 2 2
46 Cuba 29604 T 2 2
47 Cuba 29605 A 2 2
48 Cuba 29606 C 2 2
49 Cuba 29607 T 2 2
50 Cuba 29608 C 2 2
51 Cuba 29609 T 2 2
52 Cuba 29610 T 2 2
53 Cuba 29611 G 2 2
54 Cuba 29612 T 2 2
55 Cuba 29613 G 2 2
56 Cuba 29614 C 2 2
57 Cuba 29615 A 2 2
58 Cuba 29616 G 2 2
59 Cuba 29617 A 2 2
60 Cuba 29618 A 2 2
61 Cuba 29619 T 2 2
62 Cuba 29620 G 2 2
63 Cuba 29621 A 2 2
64 Cuba 29622 A 2 2
65 Cuba 29623 T 2 2
66 Cuba 29624 T 2 2
67 Cuba 29625 C 2 2
68 Cuba 29626 T 2 2
69 Cuba 29627 C 2 2
70 Cuba 29628 G 2 2
71 Cuba 29629 T 2 2
72 Cuba 29630 A 2 2
73 Cuba 29631 A 2 2
74 Cuba 29632 C 2 2
75 Cuba 29633 T 2 2
76 Cuba 29634 A 2 2
77 Cuba 29635 C 2 2
78 Cuba 29636 A 2 2
79 Cuba 29637 T 2 2
80 Cuba 29638 A 2 2
81 Cuba 29639 G 2 2
82 Cuba 29640 C 2 2
83 Cuba 29641 A 2 2
84 Cuba 29642 C 2 2
85 Cuba 29643 A 2 2
86 Cuba 29644 A 2 2
87 Cuba 29645 G 2 2
88 Cuba 29646 T 2 2
89 Cuba 29647 A 2 2
90 Cuba 29648 G 2 2
91 Cuba 29649 A 2 2
92 Cuba 29650 T 2 2
93 Cuba 29651 G 2 2
94 Cuba 29652 T 2 2
95 Cuba 29653 A 2 2
96 Cuba 29654 G 2 2
97 Cuba 29655 T 2 2
98 Cuba 29656 T 2 2
99 Cuba 29657 A 2 2
100 Cuba 29658 A 2 2
101 Cuba 29659 C 2 2
102 Cuba 29660 T 2 2
103 Cuba 29661 T 2 2
104 Cuba 29662 T 2 2
105 Cuba 29663 A 2 2
106 Cuba 29664 A 2 2
107 Cuba 29665 T 2 2
108 Cuba 29666 C 2 2
109 Cuba 29667 T 2 2
110 Cuba 29668 C 2 2
111 Cuba 29669 A 2 2
112 Cuba 29670 C 2 2
113 Cuba 29671 A 2 2
114 Cuba 29672 T 2 2
115 Cuba 29673 A 2 2
116 Cuba 29674 G 2 2