National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Croatia 29558 A 50 50
1 Croatia 29559 T 50 50
2 Croatia 29560 G 50 50
3 Croatia 29561 G 50 50
4 Croatia 29562 G 50 50
5 Croatia 29563 C 50 50
6 Croatia 29564 T 50 50
7 Croatia 29565 A 50 50
8 Croatia 29566 T 50 50
9 Croatia 29567 A 50 50
10 Croatia 29568 T 50 50
11 Croatia 29569 A 50 50
12 Croatia 29570 A 50 50
13 Croatia 29571 A 50 50
14 Croatia 29572 C 50 50
15 Croatia 29573 G 50 50
16 Croatia 29574 T 50 50
17 Croatia 29575 T 50 50
18 Croatia 29576 T 50 50
19 Croatia 29577 T 50 50
20 Croatia 29578 C 50 50
21 Croatia 29579 G 50 50
22 Croatia 29580 C 50 50
23 Croatia 29581 T 50 50
24 Croatia 29582 T 50 50
25 Croatia 29583 T 50 50
26 Croatia 29584 T 50 50
27 Croatia 29585 C 50 50
28 Croatia 29586 C 50 50
29 Croatia 29587 G 50 50
30 Croatia 29588 T 50 50
31 Croatia 29589 T 50 50
32 Croatia 29590 T 50 50
33 Croatia 29591 A 50 50
34 Croatia 29592 C 50 50
35 Croatia 29593 G 50 50
36 Croatia 29594 A 50 50
37 Croatia 29595 T 50 50
38 Croatia 29596 A 50 50
39 Croatia 29597 T 50 50
40 Croatia 29598 A 50 50
41 Croatia 29599 T 50 50
42 Croatia 29600 A 50 50
43 Croatia 29601 G 50 50
44 Croatia 29602 T 50 50
45 Croatia 29603 C 50 50
46 Croatia 29604 T 50 50
47 Croatia 29605 A 50 50
48 Croatia 29606 C 50 50
49 Croatia 29607 T 50 50
50 Croatia 29608 C 50 50
51 Croatia 29609 T 50 50
52 Croatia 29610 T 50 50
53 Croatia 29611 G 50 50
54 Croatia 29612 T 50 50
55 Croatia 29613 G 50 50
56 Croatia 29614 C 50 50
57 Croatia 29615 A 50 50
58 Croatia 29616 G 50 50
59 Croatia 29617 A 50 50
60 Croatia 29618 A 50 50
61 Croatia 29619 T 50 50
62 Croatia 29620 G 50 50
63 Croatia 29621 A 50 50
64 Croatia 29622 A 50 50
65 Croatia 29623 T 50 50
66 Croatia 29624 T 50 50
67 Croatia 29625 C 50 50
68 Croatia 29626 T 50 50
69 Croatia 29627 C 50 50
70 Croatia 29628 G 50 50
71 Croatia 29629 T 50 50
72 Croatia 29630 A 50 50
73 Croatia 29631 A 50 50
74 Croatia 29632 C 50 50
75 Croatia 29633 T 50 50
76 Croatia 29634 A 50 50
77 Croatia 29635 C 50 50
78 Croatia 29636 A 50 50
79 Croatia 29637 T 50 50
80 Croatia 29638 A 50 50
81 Croatia 29639 G 50 50
82 Croatia 29640 C 50 50
83 Croatia 29641 A 50 50
84 Croatia 29642 C 50 50
85 Croatia 29643 A 50 50
86 Croatia 29644 A 50 50
87 Croatia 29645 G 50 50
88 Croatia 29646 T 50 50
89 Croatia 29647 A 50 50
90 Croatia 29648 G 50 50
91 Croatia 29649 A 50 50
92 Croatia 29650 T 50 50
93 Croatia 29651 G 50 50
94 Croatia 29652 T 50 50
95 Croatia 29653 A 50 50
96 Croatia 29654 G 50 50
97 Croatia 29655 T 50 50
98 Croatia 29656 T 50 50
99 Croatia 29657 A 50 50
100 Croatia 29658 A 50 50
101 Croatia 29659 C 50 50
102 Croatia 29660 T 50 50
103 Croatia 29661 T 50 50
104 Croatia 29662 T 50 50
105 Croatia 29663 A 50 50
106 Croatia 29664 A 50 50
107 Croatia 29665 T 50 50
108 Croatia 29666 C 50 50
109 Croatia 29667 T 50 50
110 Croatia 29668 C 50 50
111 Croatia 29669 A 50 50
112 Croatia 29670 C 50 50
113 Croatia 29671 A 50 50
114 Croatia 29672 T 50 50
115 Croatia 29673 A 50 50
116 Croatia 29674 G 50 50