National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                           1    
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 CotedIvoire 29558 A 65 65
1 CotedIvoire 29559 T 65 65
2 CotedIvoire 29560 G 65 65
3 CotedIvoire 29561 G 65 65
4 CotedIvoire 29562 G 65 65
5 CotedIvoire 29563 C 65 65
6 CotedIvoire 29564 T 65 65
7 CotedIvoire 29565 A 65 65
8 CotedIvoire 29566 T 65 65
9 CotedIvoire 29567 A 65 65
10 CotedIvoire 29568 T C 65 63 Ile4Thr
11 CotedIvoire 29569 A 65 65
12 CotedIvoire 29570 A 65 65
13 CotedIvoire 29571 A 65 65
14 CotedIvoire 29572 C 65 65
15 CotedIvoire 29573 G 65 65
16 CotedIvoire 29574 T 65 65
17 CotedIvoire 29575 T 65 65
18 CotedIvoire 29576 T 65 65
19 CotedIvoire 29577 T 65 65
20 CotedIvoire 29578 C 65 65
21 CotedIvoire 29579 G 65 65
22 CotedIvoire 29580 C 65 65
23 CotedIvoire 29581 T 65 65
24 CotedIvoire 29582 T 65 65
25 CotedIvoire 29583 T 65 65
26 CotedIvoire 29584 T 65 65
27 CotedIvoire 29585 C 65 65
28 CotedIvoire 29586 C 65 65
29 CotedIvoire 29587 G 65 65
30 CotedIvoire 29588 T 65 65
31 CotedIvoire 29589 T 65 65
32 CotedIvoire 29590 T 65 65
33 CotedIvoire 29591 A 65 65
34 CotedIvoire 29592 C 65 65
35 CotedIvoire 29593 G 65 65
36 CotedIvoire 29594 A 65 65
37 CotedIvoire 29595 T 65 65
38 CotedIvoire 29596 A 65 65
39 CotedIvoire 29597 T 65 65
40 CotedIvoire 29598 A 65 65
41 CotedIvoire 29599 T 65 65
42 CotedIvoire 29600 A 65 65
43 CotedIvoire 29601 G 65 65
44 CotedIvoire 29602 T 65 65
45 CotedIvoire 29603 C 65 65
46 CotedIvoire 29604 T 65 65
47 CotedIvoire 29605 A 65 65
48 CotedIvoire 29606 C 65 65
49 CotedIvoire 29607 T 65 65
50 CotedIvoire 29608 C 65 65
51 CotedIvoire 29609 T 65 65
52 CotedIvoire 29610 T 65 65
53 CotedIvoire 29611 G 65 65
54 CotedIvoire 29612 T 65 65
55 CotedIvoire 29613 G 65 65
56 CotedIvoire 29614 C 65 65
57 CotedIvoire 29615 A 65 65
58 CotedIvoire 29616 G 65 65
59 CotedIvoire 29617 A 65 65
60 CotedIvoire 29618 A 65 65
61 CotedIvoire 29619 T 65 65
62 CotedIvoire 29620 G 65 65
63 CotedIvoire 29621 A 65 65
64 CotedIvoire 29622 A 65 65
65 CotedIvoire 29623 T 65 65
66 CotedIvoire 29624 T 65 65
67 CotedIvoire 29625 C 65 65
68 CotedIvoire 29626 T 65 65
69 CotedIvoire 29627 C 65 65
70 CotedIvoire 29628 G 65 65
71 CotedIvoire 29629 T 65 65
72 CotedIvoire 29630 A 65 65
73 CotedIvoire 29631 A 65 65
74 CotedIvoire 29632 C 65 65
75 CotedIvoire 29633 T 65 65
76 CotedIvoire 29634 A 65 65
77 CotedIvoire 29635 C 65 65
78 CotedIvoire 29636 A 65 65
79 CotedIvoire 29637 T 65 65
80 CotedIvoire 29638 A 65 65
81 CotedIvoire 29639 G 65 65
82 CotedIvoire 29640 C 65 65
83 CotedIvoire 29641 A 65 65
84 CotedIvoire 29642 C 65 65
85 CotedIvoire 29643 A 65 65
86 CotedIvoire 29644 A 65 65
87 CotedIvoire 29645 G 65 65
88 CotedIvoire 29646 T 65 65
89 CotedIvoire 29647 A 65 65
90 CotedIvoire 29648 G 65 65
91 CotedIvoire 29649 A 65 65
92 CotedIvoire 29650 T 65 65
93 CotedIvoire 29651 G 65 65
94 CotedIvoire 29652 T 65 65
95 CotedIvoire 29653 A 65 65
96 CotedIvoire 29654 G 65 65
97 CotedIvoire 29655 T 65 65
98 CotedIvoire 29656 T 65 65
99 CotedIvoire 29657 A 65 65
100 CotedIvoire 29658 A 65 65
101 CotedIvoire 29659 C 65 65
102 CotedIvoire 29660 T 65 65
103 CotedIvoire 29661 T 65 65
104 CotedIvoire 29662 T 65 65
105 CotedIvoire 29663 A 65 65
106 CotedIvoire 29664 A 65 65
107 CotedIvoire 29665 T 65 65
108 CotedIvoire 29666 C 62 62
109 CotedIvoire 29667 T 62 62
110 CotedIvoire 29668 C 62 62
111 CotedIvoire 29669 A 62 62
112 CotedIvoire 29670 C 62 62
113 CotedIvoire 29671 A 62 62
114 CotedIvoire 29672 T 62 62
115 CotedIvoire 29673 A 62 62
116 CotedIvoire 29674 G 62 62