National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                             1  
L     12                                
M     6                                
N     16                                
P     3                         1      
Q 1   3                                
R     6             1                  
S     6                                
T     6                           1    
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Costa_Rica 29558 A 181 181
1 Costa_Rica 29559 T 181 181
2 Costa_Rica 29560 G 181 181
3 Costa_Rica 29561 G 181 181
4 Costa_Rica 29562 G 181 181
5 Costa_Rica 29563 C 181 181
6 Costa_Rica 29564 T 181 181
7 Costa_Rica 29565 A 181 181
8 Costa_Rica 29566 T 181 181
9 Costa_Rica 29567 A G 181 177 Ile4Val
10 Costa_Rica 29568 T 181 181
11 Costa_Rica 29569 A 181 181
12 Costa_Rica 29570 A 181 181
13 Costa_Rica 29571 A 181 181
14 Costa_Rica 29572 C 181 181
15 Costa_Rica 29573 G 181 181
16 Costa_Rica 29574 T 181 181
17 Costa_Rica 29575 T 181 181
18 Costa_Rica 29576 T 181 181
19 Costa_Rica 29577 T 181 181
20 Costa_Rica 29578 C 181 181
21 Costa_Rica 29579 G 181 181
22 Costa_Rica 29580 C 181 181
23 Costa_Rica 29581 T 181 181
24 Costa_Rica 29582 T 181 181
25 Costa_Rica 29583 T 181 180
26 Costa_Rica 29584 T 181 180
27 Costa_Rica 29585 C T 181 180 Pro10Ser
28 Costa_Rica 29586 C 181 180
29 Costa_Rica 29587 G 181 181
30 Costa_Rica 29588 T 181 180
31 Costa_Rica 29589 T 181 181
32 Costa_Rica 29590 T 181 181
33 Costa_Rica 29591 A 181 181
34 Costa_Rica 29592 C 181 181
35 Costa_Rica 29593 G 181 181
36 Costa_Rica 29594 A 181 181
37 Costa_Rica 29595 T 181 181
38 Costa_Rica 29596 A 181 181
39 Costa_Rica 29597 T 181 181
40 Costa_Rica 29598 A 181 181
41 Costa_Rica 29599 T 181 181
42 Costa_Rica 29600 A 181 181
43 Costa_Rica 29601 G 181 181
44 Costa_Rica 29602 T 181 181
45 Costa_Rica 29603 C 181 181
46 Costa_Rica 29604 T 181 180
47 Costa_Rica 29605 A 181 181
48 Costa_Rica 29606 C 181 181
49 Costa_Rica 29607 T 181 181
50 Costa_Rica 29608 C 181 181
51 Costa_Rica 29609 T 181 181
52 Costa_Rica 29610 T 181 181
53 Costa_Rica 29611 G 181 181
54 Costa_Rica 29612 T 181 181
55 Costa_Rica 29613 G 181 181
56 Costa_Rica 29614 C 181 181
57 Costa_Rica 29615 A 181 181
58 Costa_Rica 29616 G 181 181
59 Costa_Rica 29617 A 181 181
60 Costa_Rica 29618 A 181 181
61 Costa_Rica 29619 T 181 181
62 Costa_Rica 29620 G 181 181
63 Costa_Rica 29621 A 181 181
64 Costa_Rica 29622 A 181 181
65 Costa_Rica 29623 T 181 181
66 Costa_Rica 29624 T 181 181
67 Costa_Rica 29625 C 181 181
68 Costa_Rica 29626 T 181 181
69 Costa_Rica 29627 C 181 181
70 Costa_Rica 29628 G T 181 180 Arg24Leu
71 Costa_Rica 29629 T 181 181
72 Costa_Rica 29630 A 181 181
73 Costa_Rica 29631 A 181 181
74 Costa_Rica 29632 C 181 181
75 Costa_Rica 29633 T 181 181
76 Costa_Rica 29634 A 181 181
77 Costa_Rica 29635 C 181 181
78 Costa_Rica 29636 A 181 181
79 Costa_Rica 29637 T 181 181
80 Costa_Rica 29638 A 181 181
81 Costa_Rica 29639 G 181 181
82 Costa_Rica 29640 C 181 181
83 Costa_Rica 29641 A 181 181
84 Costa_Rica 29642 C T 181 180 Gln29*
85 Costa_Rica 29643 A 181 181
86 Costa_Rica 29644 A 181 181
87 Costa_Rica 29645 G 181 181
88 Costa_Rica 29646 T 181 181
89 Costa_Rica 29647 A 181 181
90 Costa_Rica 29648 G 181 181
91 Costa_Rica 29649 A 181 181
92 Costa_Rica 29650 T 181 181
93 Costa_Rica 29651 G 181 181
94 Costa_Rica 29652 T 181 181
95 Costa_Rica 29653 A 181 181
96 Costa_Rica 29654 G 181 181
97 Costa_Rica 29655 T 181 181
98 Costa_Rica 29656 T 181 181
99 Costa_Rica 29657 A 181 181
100 Costa_Rica 29658 A 181 181
101 Costa_Rica 29659 C 181 181
102 Costa_Rica 29660 T 181 181
103 Costa_Rica 29661 T 181 181
104 Costa_Rica 29662 T 181 181
105 Costa_Rica 29663 A 181 181
106 Costa_Rica 29664 A 181 181
107 Costa_Rica 29665 T 181 181
108 Costa_Rica 29666 C 181 181
109 Costa_Rica 29667 T 181 180
110 Costa_Rica 29668 C 181 181
111 Costa_Rica 29669 A 181 181
112 Costa_Rica 29670 C 181 181
113 Costa_Rica 29671 A G 181 180 Thr38Thr
114 Costa_Rica 29672 T 181 181
115 Costa_Rica 29673 A 181 181
116 Costa_Rica 29674 G 181 181