National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                             1  
C     3   1                            
D     3                                
F     12             1                  
G     3                                
I     9                             1  
L     12                                
M     6                                
N     16                                
P     3                                
Q 1   3                                
R     6                                
S     6                                
T     6                                
V     12             1                  
Y     9   1                            

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Colombia 29558 A 287 287
1 Colombia 29559 T 287 287
2 Colombia 29560 G 287 287
3 Colombia 29561 G 287 287
4 Colombia 29562 G 287 287
5 Colombia 29563 C 287 287
6 Colombia 29564 T 287 287
7 Colombia 29565 A G 287 286 Tyr3Cys
8 Colombia 29566 T 287 287
9 Colombia 29567 A G 287 285 Ile4Val
10 Colombia 29568 T 287 287
11 Colombia 29569 A 287 287
12 Colombia 29570 A 287 287
13 Colombia 29571 A 287 287
14 Colombia 29572 C 287 287
15 Colombia 29573 G 287 287
16 Colombia 29574 T 287 287
17 Colombia 29575 T 287 287
18 Colombia 29576 T 287 287
19 Colombia 29577 T 287 287
20 Colombia 29578 C 287 287
21 Colombia 29579 G 287 287
22 Colombia 29580 C 287 287
23 Colombia 29581 T 287 287
24 Colombia 29582 T 287 287
25 Colombia 29583 T 287 287
26 Colombia 29584 T 287 287
27 Colombia 29585 C 287 287
28 Colombia 29586 C 287 287
29 Colombia 29587 G 287 287
30 Colombia 29588 T C 287 286 Phe11Leu
31 Colombia 29589 T 287 287
32 Colombia 29590 T 287 287
33 Colombia 29591 A 287 287
34 Colombia 29592 C 287 287
35 Colombia 29593 G 287 287
36 Colombia 29594 A 287 287
37 Colombia 29595 T 287 287
38 Colombia 29596 A 287 287
39 Colombia 29597 T 287 287
40 Colombia 29598 A 287 287
41 Colombia 29599 T 287 287
42 Colombia 29600 A 287 287
43 Colombia 29601 G 287 287
44 Colombia 29602 T 287 287
45 Colombia 29603 C 287 287
46 Colombia 29604 T 287 287
47 Colombia 29605 A 287 287
48 Colombia 29606 C 287 287
49 Colombia 29607 T 287 287
50 Colombia 29608 C 287 287
51 Colombia 29609 T 287 287
52 Colombia 29610 T 287 287
53 Colombia 29611 G 287 287
54 Colombia 29612 T 287 287
55 Colombia 29613 G 287 287
56 Colombia 29614 C T 287 274 Cys19Cys
57 Colombia 29615 A 287 287
58 Colombia 29616 G 287 287
59 Colombia 29617 A 287 287
60 Colombia 29618 A 287 287
61 Colombia 29619 T 287 287
62 Colombia 29620 G 287 287
63 Colombia 29621 A 287 287
64 Colombia 29622 A 287 287
65 Colombia 29623 T 287 287
66 Colombia 29624 T 287 287
67 Colombia 29625 C 287 287
68 Colombia 29626 T 287 287
69 Colombia 29627 C 287 287
70 Colombia 29628 G 287 287
71 Colombia 29629 T 287 287
72 Colombia 29630 A 287 287
73 Colombia 29631 A 287 287
74 Colombia 29632 C 287 287
75 Colombia 29633 T 287 287
76 Colombia 29634 A 287 287
77 Colombia 29635 C 287 287
78 Colombia 29636 A 287 287
79 Colombia 29637 T 287 287
80 Colombia 29638 A 287 287
81 Colombia 29639 G 287 287
82 Colombia 29640 C T 287 285 Ala28Val
83 Colombia 29641 A 287 287
84 Colombia 29642 C T 287 285 Gln29*
85 Colombia 29643 A 287 287
86 Colombia 29644 A 287 287
87 Colombia 29645 G T 287 286 Val30Leu
88 Colombia 29646 T 287 287
89 Colombia 29647 A 287 287
90 Colombia 29648 G 287 287
91 Colombia 29649 A 287 287
92 Colombia 29650 T 287 287
93 Colombia 29651 G 287 287
94 Colombia 29652 T 287 287
95 Colombia 29653 A 287 287
96 Colombia 29654 G 287 287
97 Colombia 29655 T 287 287
98 Colombia 29656 T 287 287
99 Colombia 29657 A 287 287
100 Colombia 29658 A 287 287
101 Colombia 29659 C 287 287
102 Colombia 29660 T 287 287
103 Colombia 29661 T 287 287
104 Colombia 29662 T 287 287
105 Colombia 29663 A 287 287
106 Colombia 29664 A 287 287
107 Colombia 29665 T 287 287
108 Colombia 29666 C 262 262
109 Colombia 29667 T 262 262
110 Colombia 29668 C 262 262
111 Colombia 29669 A 262 262
112 Colombia 29670 C 262 262
113 Colombia 29671 A 262 262
114 Colombia 29672 T 262 262
115 Colombia 29673 A 262 262
116 Colombia 29674 G 261 261