National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6 1                              
C     3   1                            
D     3                                
F     12       1                        
G     3                                
I     9                                
L     12                                
M     6                                
N     16                 1              
P     3                                
Q 1   3                                
R     6   1                            
S     6                                
T     6                                
V     12                                
Y     9                               1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Chile 29558 A 962 962
1 Chile 29559 T 962 962
2 Chile 29560 G 962 962
3 Chile 29561 G 962 962
4 Chile 29562 G 962 962
5 Chile 29563 C 962 962
6 Chile 29564 T 962 962
7 Chile 29565 A 962 962
8 Chile 29566 T 962 962
9 Chile 29567 A 962 962
10 Chile 29568 T 962 962
11 Chile 29569 A 962 962
12 Chile 29570 A 962 962
13 Chile 29571 A 962 962
14 Chile 29572 C 962 962
15 Chile 29573 G 962 962
16 Chile 29574 T 962 962
17 Chile 29575 T 962 962
18 Chile 29576 T 962 961
19 Chile 29577 T 962 962
20 Chile 29578 C T 962 928 Phe7Phe
21 Chile 29579 G 962 962
22 Chile 29580 C 962 962
23 Chile 29581 T C 962 961 Ala8Ala
24 Chile 29582 T 962 962
25 Chile 29583 T 962 962
26 Chile 29584 T 962 962
27 Chile 29585 C 962 962
28 Chile 29586 C 962 962
29 Chile 29587 G 962 962
30 Chile 29588 T 962 962
31 Chile 29589 T 962 962
32 Chile 29590 T 962 962
33 Chile 29591 A 962 962
34 Chile 29592 C 962 962
35 Chile 29593 G 962 962
36 Chile 29594 A 962 962
37 Chile 29595 T 962 962
38 Chile 29596 A 962 962
39 Chile 29597 T 962 962
40 Chile 29598 A 962 962
41 Chile 29599 T 962 962
42 Chile 29600 A 962 962
43 Chile 29601 G 962 962
44 Chile 29602 T 962 962
45 Chile 29603 C 962 962
46 Chile 29604 T 962 962
47 Chile 29605 A 962 962
48 Chile 29606 C 962 962
49 Chile 29607 T 962 962
50 Chile 29608 C 962 962
51 Chile 29609 T 962 962
52 Chile 29610 T 962 962
53 Chile 29611 G 962 962
54 Chile 29612 T 962 962
55 Chile 29613 G 962 962
56 Chile 29614 C T 962 960 Cys19Cys
57 Chile 29615 A 962 962
58 Chile 29616 G 962 962
59 Chile 29617 A 962 962
60 Chile 29618 A 962 962
61 Chile 29619 T 962 962
62 Chile 29620 G 962 962
63 Chile 29621 A 962 962
64 Chile 29622 A 962 962
65 Chile 29623 T 962 962
66 Chile 29624 T 962 962
67 Chile 29625 C 962 962
68 Chile 29626 T 962 962
69 Chile 29627 C T 962 960 Arg24Cys
70 Chile 29628 G 962 962
71 Chile 29629 T 962 962
72 Chile 29630 A 962 962
73 Chile 29631 A 962 962
74 Chile 29632 C 962 962
75 Chile 29633 T 962 962
76 Chile 29634 A 962 962
77 Chile 29635 C T 962 961 Tyr26Tyr
78 Chile 29636 A 962 962
79 Chile 29637 T 962 962
80 Chile 29638 A 962 962
81 Chile 29639 G 962 962
82 Chile 29640 C 962 962
83 Chile 29641 A 962 962
84 Chile 29642 C T 962 960 Gln29*
85 Chile 29643 A 962 961
86 Chile 29644 A 962 962
87 Chile 29645 G 962 962
88 Chile 29646 T 962 962
89 Chile 29647 A 962 962
90 Chile 29648 G 962 962
91 Chile 29649 A 962 962
92 Chile 29650 T 962 962
93 Chile 29651 G 962 962
94 Chile 29652 T 962 962
95 Chile 29653 A 962 962
96 Chile 29654 G 962 962
97 Chile 29655 T 962 962
98 Chile 29656 T 962 962
99 Chile 29657 A 962 962
100 Chile 29658 A 962 962
101 Chile 29659 C T 962 959 Asn34Asn
102 Chile 29660 T 962 962
103 Chile 29661 T 962 962
104 Chile 29662 T 962 962
105 Chile 29663 A 962 962
106 Chile 29664 A 962 962
107 Chile 29665 T 962 962
108 Chile 29666 C 959 959
109 Chile 29667 T 959 959
110 Chile 29668 C 959 959
111 Chile 29669 A 959 959
112 Chile 29670 C 959 959
113 Chile 29671 A 959 959
114 Chile 29672 T 959 959
115 Chile 29673 A 959 959
116 Chile 29674 G 959 959