National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G H I L M N P Q R S T V Y
*     2                                  
-     117                                  
?                                        
A     6                               2  
C     3   1                              
D     3                                  
F     12                           1      
G     3                                  
H                                        
I     9               1             1 2  
L     12       1       1                  
M     6                                  
N     16                                  
P     3                           1 1    
Q 1   3                                  
R     6   1       1   1         1        
S     6       1                          
T     6             1   1                
V     12             1 1                  
Y     9           1                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Canada 29558 A 8489 8489
1 Canada 29559 T 8489 8489
2 Canada 29560 G 8489 8489
3 Canada 29561 G 8489 8489
4 Canada 29562 G 8489 8489
5 Canada 29563 C 8489 8489
6 Canada 29564 T 8489 8489
7 Canada 29565 A 8489 8489
8 Canada 29566 T 8489 8489
9 Canada 29567 A G,C 8489 8471 Ile4Val-p.Ile4Leu
10 Canada 29568 T 8489 8489
11 Canada 29569 A 8489 8489
12 Canada 29570 A 8489 8489
13 Canada 29571 A 8489 8489
14 Canada 29572 C 8489 8489
15 Canada 29573 G A 8489 8488 Val6Ile
16 Canada 29574 T 8489 8489
17 Canada 29575 T 8489 8489
18 Canada 29576 T 8489 8489
19 Canada 29577 T 8489 8489
20 Canada 29578 C 8489 8489
21 Canada 29579 G 8489 8489
22 Canada 29580 C T 8489 8482 Ala8Val
23 Canada 29581 T 8489 8488
24 Canada 29582 T 8489 8487
25 Canada 29583 T C 8489 8484 Phe9Ser
26 Canada 29584 T 8489 8471
27 Canada 29585 C T,A 8489 8436 Pro10Ser-p.Pro10Thr
28 Canada 29586 C 8489 8487
29 Canada 29587 G 8489 8482
30 Canada 29588 T 8489 8489
31 Canada 29589 T 8489 8489
32 Canada 29590 T 8489 8489
33 Canada 29591 A 8489 8489
34 Canada 29592 C T 8489 8473 Thr12Met
35 Canada 29593 G 8489 8489
36 Canada 29594 A G 8489 8488 Ile13Val
37 Canada 29595 T C 8489 8488 Ile13Thr
38 Canada 29596 A 8489 8489
39 Canada 29597 T 8489 8489
40 Canada 29598 A 8489 8489
41 Canada 29599 T 8489 8489
42 Canada 29600 A 8489 8489
43 Canada 29601 G 8489 8489
44 Canada 29602 T 8489 8489
45 Canada 29603 C 8489 8489
46 Canada 29604 T 8489 8489
47 Canada 29605 A 8489 8489
48 Canada 29606 C 8489 8489
49 Canada 29607 T 8489 8489
50 Canada 29608 C 8489 8489
51 Canada 29609 T 8489 8489
52 Canada 29610 T 8489 8489
53 Canada 29611 G 8489 8489
54 Canada 29612 T 8489 8489
55 Canada 29613 G 8489 8489
56 Canada 29614 C T 8489 8472 Cys19Cys
57 Canada 29615 A 8489 8489
58 Canada 29616 G 8489 8489
59 Canada 29617 A G 8489 8484 Arg20Arg
60 Canada 29618 A 8550 8550
61 Canada 29619 T 8550 8550
62 Canada 29620 G 8550 8550
63 Canada 29621 A 8550 8550
64 Canada 29622 A 8550 8550
65 Canada 29623 T 8550 8550
66 Canada 29624 T 8550 8550
67 Canada 29625 C T 8550 8548 Ser23Phe
68 Canada 29626 T 8550 8550
69 Canada 29627 C T 8550 8548 Arg24Cys
70 Canada 29628 G T,A 8550 8544 Arg24Leu-p.Arg24His
71 Canada 29629 T 8550 8550
72 Canada 29630 A 8550 8550
73 Canada 29631 A 8550 8550
74 Canada 29632 C 8550 8550
75 Canada 29633 T C 8550 8549 Tyr26His
76 Canada 29634 A 8550 8550
77 Canada 29635 C T 8550 8548 Tyr26Tyr
78 Canada 29636 A 8550 8550
79 Canada 29637 T 8550 8550
80 Canada 29638 A 8550 8550
81 Canada 29639 G 8550 8550
82 Canada 29640 C T 8550 8546 Ala28Val
83 Canada 29641 A 8550 8550
84 Canada 29642 C T 8550 8546 Gln29*
85 Canada 29643 A 8550 8550
86 Canada 29644 A 8550 8550
87 Canada 29645 G T 8550 8545 Val30Leu
88 Canada 29646 T 8550 8550
89 Canada 29647 A 8550 8550
90 Canada 29648 G 8550 8550
91 Canada 29649 A 8550 8550
92 Canada 29650 T 8550 8550
93 Canada 29651 G 8550 8550
94 Canada 29652 T 8550 8550
95 Canada 29653 A 8550 8550
96 Canada 29654 G 8550 8550
97 Canada 29655 T 8550 8550
98 Canada 29656 T 8550 8550
99 Canada 29657 A 8550 8550
100 Canada 29658 A 8550 8550
101 Canada 29659 C 8550 8550
102 Canada 29660 T 8550 8550
103 Canada 29661 T 8550 8550
104 Canada 29662 T 8550 8550
105 Canada 29663 A 8550 8550
106 Canada 29664 A 8550 8550
107 Canada 29665 T 8550 8550
108 Canada 29666 C T 8506 8504 Leu37Phe
109 Canada 29667 T 8505 8505
110 Canada 29668 C T 8505 8503 Leu37Leu
111 Canada 29669 A 8505 8505
112 Canada 29670 C T 8505 8498 Thr38Ile
113 Canada 29671 A 8505 8505
114 Canada 29672 T 8505 8505
115 Canada 29673 A 8505 8505
116 Canada 29674 G 8505 8505