National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cameroon 29558 A 21 21
1 Cameroon 29559 T 21 21
2 Cameroon 29560 G 21 21
3 Cameroon 29561 G 21 21
4 Cameroon 29562 G 21 21
5 Cameroon 29563 C 21 21
6 Cameroon 29564 T 21 21
7 Cameroon 29565 A 21 21
8 Cameroon 29566 T 21 21
9 Cameroon 29567 A 21 21
10 Cameroon 29568 T 21 21
11 Cameroon 29569 A 21 21
12 Cameroon 29570 A 21 21
13 Cameroon 29571 A 21 21
14 Cameroon 29572 C 21 21
15 Cameroon 29573 G 21 21
16 Cameroon 29574 T 21 21
17 Cameroon 29575 T 21 21
18 Cameroon 29576 T 21 21
19 Cameroon 29577 T 21 21
20 Cameroon 29578 C 21 21
21 Cameroon 29579 G 21 21
22 Cameroon 29580 C 21 21
23 Cameroon 29581 T 21 21
24 Cameroon 29582 T 21 21
25 Cameroon 29583 T 21 21
26 Cameroon 29584 T 21 21
27 Cameroon 29585 C 21 21
28 Cameroon 29586 C 21 21
29 Cameroon 29587 G 21 21
30 Cameroon 29588 T 21 21
31 Cameroon 29589 T 21 21
32 Cameroon 29590 T 21 21
33 Cameroon 29591 A 21 21
34 Cameroon 29592 C 21 21
35 Cameroon 29593 G 21 21
36 Cameroon 29594 A 22 22
37 Cameroon 29595 T 22 22
38 Cameroon 29596 A 22 22
39 Cameroon 29597 T 22 22
40 Cameroon 29598 A 22 22
41 Cameroon 29599 T 22 22
42 Cameroon 29600 A 22 22
43 Cameroon 29601 G 22 22
44 Cameroon 29602 T 22 22
45 Cameroon 29603 C 22 22
46 Cameroon 29604 T 22 22
47 Cameroon 29605 A 22 22
48 Cameroon 29606 C 22 22
49 Cameroon 29607 T 22 22
50 Cameroon 29608 C 22 22
51 Cameroon 29609 T 22 22
52 Cameroon 29610 T 22 22
53 Cameroon 29611 G 22 22
54 Cameroon 29612 T 22 22
55 Cameroon 29613 G 22 22
56 Cameroon 29614 C 22 22
57 Cameroon 29615 A 22 22
58 Cameroon 29616 G 22 22
59 Cameroon 29617 A 22 22
60 Cameroon 29618 A 22 22
61 Cameroon 29619 T 22 22
62 Cameroon 29620 G 22 22
63 Cameroon 29621 A 22 22
64 Cameroon 29622 A 22 22
65 Cameroon 29623 T 22 22
66 Cameroon 29624 T 22 22
67 Cameroon 29625 C 22 22
68 Cameroon 29626 T 22 22
69 Cameroon 29627 C 22 22
70 Cameroon 29628 G 22 22
71 Cameroon 29629 T 22 22
72 Cameroon 29630 A 22 22
73 Cameroon 29631 A 22 22
74 Cameroon 29632 C 22 22
75 Cameroon 29633 T 22 22
76 Cameroon 29634 A 22 22
77 Cameroon 29635 C 22 22
78 Cameroon 29636 A 22 22
79 Cameroon 29637 T 22 22
80 Cameroon 29638 A 22 22
81 Cameroon 29639 G 22 22
82 Cameroon 29640 C 22 22
83 Cameroon 29641 A 22 22
84 Cameroon 29642 C 22 22
85 Cameroon 29643 A 22 22
86 Cameroon 29644 A 22 22
87 Cameroon 29645 G T 22 20 Val30Leu
88 Cameroon 29646 T 22 22
89 Cameroon 29647 A 22 22
90 Cameroon 29648 G 22 22
91 Cameroon 29649 A 22 22
92 Cameroon 29650 T 22 22
93 Cameroon 29651 G 22 22
94 Cameroon 29652 T 22 22
95 Cameroon 29653 A 22 22
96 Cameroon 29654 G 22 22
97 Cameroon 29655 T 22 22
98 Cameroon 29656 T 22 22
99 Cameroon 29657 A 22 22
100 Cameroon 29658 A 22 22
101 Cameroon 29659 C 22 22
102 Cameroon 29660 T 22 22
103 Cameroon 29661 T 22 22
104 Cameroon 29662 T 22 22
105 Cameroon 29663 A 22 22
106 Cameroon 29664 A 22 22
107 Cameroon 29665 T 22 22
108 Cameroon 29666 C 22 22
109 Cameroon 29667 T 22 22
110 Cameroon 29668 C 22 22
111 Cameroon 29669 A 22 22
112 Cameroon 29670 C 22 22
113 Cameroon 29671 A 22 22
114 Cameroon 29672 T 22 22
115 Cameroon 29673 A 22 22
116 Cameroon 29674 G 22 22