National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16     1                          
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Cambodia 29558 A 4 4
1 Cambodia 29559 T 4 4
2 Cambodia 29560 G 4 4
3 Cambodia 29561 G 4 4
4 Cambodia 29562 G 4 4
5 Cambodia 29563 C 4 4
6 Cambodia 29564 T 4 4
7 Cambodia 29565 A 4 4
8 Cambodia 29566 T 4 4
9 Cambodia 29567 A 4 4
10 Cambodia 29568 T 4 4
11 Cambodia 29569 A 4 4
12 Cambodia 29570 A 4 4
13 Cambodia 29571 A 4 4
14 Cambodia 29572 C 4 4
15 Cambodia 29573 G 4 4
16 Cambodia 29574 T 4 4
17 Cambodia 29575 T 4 4
18 Cambodia 29576 T 4 4
19 Cambodia 29577 T 4 4
20 Cambodia 29578 C 4 4
21 Cambodia 29579 G 4 4
22 Cambodia 29580 C 4 4
23 Cambodia 29581 T 4 4
24 Cambodia 29582 T 4 4
25 Cambodia 29583 T 4 4
26 Cambodia 29584 T 4 4
27 Cambodia 29585 C 4 4
28 Cambodia 29586 C 4 4
29 Cambodia 29587 G 4 4
30 Cambodia 29588 T 4 4
31 Cambodia 29589 T 4 4
32 Cambodia 29590 T 4 4
33 Cambodia 29591 A 4 4
34 Cambodia 29592 C 4 4
35 Cambodia 29593 G 4 4
36 Cambodia 29594 A 4 4
37 Cambodia 29595 T 4 4
38 Cambodia 29596 A 4 4
39 Cambodia 29597 T 4 4
40 Cambodia 29598 A 4 4
41 Cambodia 29599 T 4 4
42 Cambodia 29600 A 4 4
43 Cambodia 29601 G 4 4
44 Cambodia 29602 T 4 4
45 Cambodia 29603 C 4 4
46 Cambodia 29604 T 4 4
47 Cambodia 29605 A 4 4
48 Cambodia 29606 C 4 4
49 Cambodia 29607 T 4 4
50 Cambodia 29608 C 4 4
51 Cambodia 29609 T 4 4
52 Cambodia 29610 T 4 4
53 Cambodia 29611 G 4 4
54 Cambodia 29612 T 4 4
55 Cambodia 29613 G 4 4
56 Cambodia 29614 C 4 4
57 Cambodia 29615 A 4 4
58 Cambodia 29616 G 4 4
59 Cambodia 29617 A 4 4
60 Cambodia 29618 A 4 4
61 Cambodia 29619 T 4 4
62 Cambodia 29620 G 4 4
63 Cambodia 29621 A 4 4
64 Cambodia 29622 A 4 4
65 Cambodia 29623 T 4 4
66 Cambodia 29624 T 4 4
67 Cambodia 29625 C 4 4
68 Cambodia 29626 T 4 4
69 Cambodia 29627 C 4 4
70 Cambodia 29628 G 4 4
71 Cambodia 29629 T 4 4
72 Cambodia 29630 A G 4 2 Asn25Asp
73 Cambodia 29631 A 4 4
74 Cambodia 29632 C 4 4
75 Cambodia 29633 T 4 4
76 Cambodia 29634 A 4 4
77 Cambodia 29635 C 4 4
78 Cambodia 29636 A 4 4
79 Cambodia 29637 T 4 4
80 Cambodia 29638 A 4 4
81 Cambodia 29639 G 4 4
82 Cambodia 29640 C 4 4
83 Cambodia 29641 A 4 4
84 Cambodia 29642 C 4 4
85 Cambodia 29643 A 4 4
86 Cambodia 29644 A 4 4
87 Cambodia 29645 G 4 4
88 Cambodia 29646 T 4 4
89 Cambodia 29647 A 4 4
90 Cambodia 29648 G 4 4
91 Cambodia 29649 A 4 4
92 Cambodia 29650 T 4 4
93 Cambodia 29651 G 4 4
94 Cambodia 29652 T 4 4
95 Cambodia 29653 A 4 4
96 Cambodia 29654 G 4 4
97 Cambodia 29655 T 4 4
98 Cambodia 29656 T 4 4
99 Cambodia 29657 A 4 4
100 Cambodia 29658 A 4 4
101 Cambodia 29659 C 4 4
102 Cambodia 29660 T 4 4
103 Cambodia 29661 T 4 4
104 Cambodia 29662 T 4 4
105 Cambodia 29663 A 4 4
106 Cambodia 29664 A 4 4
107 Cambodia 29665 T 4 4
108 Cambodia 29666 C 4 4
109 Cambodia 29667 T 4 4
110 Cambodia 29668 C 4 4
111 Cambodia 29669 A 4 4
112 Cambodia 29670 C 4 4
113 Cambodia 29671 A 4 4
114 Cambodia 29672 T 4 4
115 Cambodia 29673 A 4 4
116 Cambodia 29674 G 4 4