National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Bulgaria 29558 A 15 15
1 Bulgaria 29559 T 15 15
2 Bulgaria 29560 G 15 15
3 Bulgaria 29561 G 15 15
4 Bulgaria 29562 G 15 15
5 Bulgaria 29563 C 15 15
6 Bulgaria 29564 T 15 15
7 Bulgaria 29565 A 15 15
8 Bulgaria 29566 T 15 15
9 Bulgaria 29567 A 15 15
10 Bulgaria 29568 T 15 15
11 Bulgaria 29569 A 15 15
12 Bulgaria 29570 A 15 15
13 Bulgaria 29571 A 15 15
14 Bulgaria 29572 C 15 15
15 Bulgaria 29573 G 15 15
16 Bulgaria 29574 T 15 15
17 Bulgaria 29575 T 15 15
18 Bulgaria 29576 T 15 15
19 Bulgaria 29577 T 15 15
20 Bulgaria 29578 C 15 15
21 Bulgaria 29579 G 15 15
22 Bulgaria 29580 C 15 15
23 Bulgaria 29581 T 15 15
24 Bulgaria 29582 T 15 15
25 Bulgaria 29583 T 15 15
26 Bulgaria 29584 T 15 15
27 Bulgaria 29585 C 15 15
28 Bulgaria 29586 C 15 15
29 Bulgaria 29587 G 15 15
30 Bulgaria 29588 T 15 15
31 Bulgaria 29589 T 15 15
32 Bulgaria 29590 T 15 15
33 Bulgaria 29591 A 15 15
34 Bulgaria 29592 C 15 15
35 Bulgaria 29593 G 15 15
36 Bulgaria 29594 A 15 15
37 Bulgaria 29595 T 15 15
38 Bulgaria 29596 A 15 15
39 Bulgaria 29597 T 15 15
40 Bulgaria 29598 A 15 15
41 Bulgaria 29599 T 15 15
42 Bulgaria 29600 A 15 15
43 Bulgaria 29601 G 15 15
44 Bulgaria 29602 T 15 15
45 Bulgaria 29603 C 15 15
46 Bulgaria 29604 T 15 15
47 Bulgaria 29605 A 15 15
48 Bulgaria 29606 C 15 15
49 Bulgaria 29607 T 15 15
50 Bulgaria 29608 C 15 15
51 Bulgaria 29609 T 15 15
52 Bulgaria 29610 T 15 15
53 Bulgaria 29611 G 15 15
54 Bulgaria 29612 T 15 15
55 Bulgaria 29613 G 15 15
56 Bulgaria 29614 C 15 15
57 Bulgaria 29615 A 15 15
58 Bulgaria 29616 G 15 15
59 Bulgaria 29617 A 15 15
60 Bulgaria 29618 A 15 15
61 Bulgaria 29619 T 15 15
62 Bulgaria 29620 G 15 15
63 Bulgaria 29621 A 15 15
64 Bulgaria 29622 A 15 15
65 Bulgaria 29623 T 15 15
66 Bulgaria 29624 T 15 15
67 Bulgaria 29625 C 15 15
68 Bulgaria 29626 T 15 15
69 Bulgaria 29627 C 15 15
70 Bulgaria 29628 G 15 15
71 Bulgaria 29629 T 15 15
72 Bulgaria 29630 A 15 15
73 Bulgaria 29631 A 15 15
74 Bulgaria 29632 C 15 15
75 Bulgaria 29633 T 15 15
76 Bulgaria 29634 A 15 15
77 Bulgaria 29635 C 15 15
78 Bulgaria 29636 A 15 15
79 Bulgaria 29637 T 15 15
80 Bulgaria 29638 A 15 15
81 Bulgaria 29639 G 15 15
82 Bulgaria 29640 C 15 15
83 Bulgaria 29641 A 15 15
84 Bulgaria 29642 C 15 15
85 Bulgaria 29643 A 15 15
86 Bulgaria 29644 A 15 15
87 Bulgaria 29645 G 15 15
88 Bulgaria 29646 T 15 15
89 Bulgaria 29647 A 15 15
90 Bulgaria 29648 G 15 15
91 Bulgaria 29649 A 15 15
92 Bulgaria 29650 T 15 15
93 Bulgaria 29651 G 15 15
94 Bulgaria 29652 T 15 15
95 Bulgaria 29653 A 15 15
96 Bulgaria 29654 G 15 15
97 Bulgaria 29655 T 15 15
98 Bulgaria 29656 T 15 15
99 Bulgaria 29657 A 15 15
100 Bulgaria 29658 A 15 15
101 Bulgaria 29659 C 15 15
102 Bulgaria 29660 T 15 15
103 Bulgaria 29661 T 15 15
104 Bulgaria 29662 T 15 15
105 Bulgaria 29663 A 15 15
106 Bulgaria 29664 A 15 15
107 Bulgaria 29665 T 15 15
108 Bulgaria 29666 C 15 15
109 Bulgaria 29667 T 15 15
110 Bulgaria 29668 C 15 15
111 Bulgaria 29669 A 15 15
112 Bulgaria 29670 C 15 15
113 Bulgaria 29671 A 15 15
114 Bulgaria 29672 T 15 15
115 Bulgaria 29673 A 15 15
116 Bulgaria 29674 G 15 15