National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Brunei 29558 A 5 5
1 Brunei 29559 T 5 5
2 Brunei 29560 G 5 5
3 Brunei 29561 G 5 5
4 Brunei 29562 G 5 5
5 Brunei 29563 C 5 5
6 Brunei 29564 T 5 5
7 Brunei 29565 A 5 5
8 Brunei 29566 T 5 5
9 Brunei 29567 A 5 5
10 Brunei 29568 T 5 5
11 Brunei 29569 A 5 5
12 Brunei 29570 A 5 5
13 Brunei 29571 A 5 5
14 Brunei 29572 C 5 5
15 Brunei 29573 G 5 5
16 Brunei 29574 T 5 5
17 Brunei 29575 T 5 5
18 Brunei 29576 T 5 5
19 Brunei 29577 T 5 5
20 Brunei 29578 C 5 5
21 Brunei 29579 G 5 5
22 Brunei 29580 C 5 5
23 Brunei 29581 T 5 5
24 Brunei 29582 T 5 5
25 Brunei 29583 T 5 5
26 Brunei 29584 T 5 5
27 Brunei 29585 C 5 5
28 Brunei 29586 C 5 5
29 Brunei 29587 G 5 5
30 Brunei 29588 T 5 5
31 Brunei 29589 T 5 5
32 Brunei 29590 T 5 5
33 Brunei 29591 A 5 5
34 Brunei 29592 C 5 5
35 Brunei 29593 G 5 5
36 Brunei 29594 A 5 5
37 Brunei 29595 T 5 5
38 Brunei 29596 A 5 5
39 Brunei 29597 T 5 5
40 Brunei 29598 A 5 5
41 Brunei 29599 T 5 5
42 Brunei 29600 A 5 5
43 Brunei 29601 G 5 5
44 Brunei 29602 T 5 5
45 Brunei 29603 C 5 5
46 Brunei 29604 T 5 5
47 Brunei 29605 A 5 5
48 Brunei 29606 C 5 5
49 Brunei 29607 T 5 5
50 Brunei 29608 C 5 5
51 Brunei 29609 T 5 5
52 Brunei 29610 T 5 5
53 Brunei 29611 G 5 5
54 Brunei 29612 T 5 5
55 Brunei 29613 G 5 5
56 Brunei 29614 C 5 5
57 Brunei 29615 A 5 5
58 Brunei 29616 G 5 5
59 Brunei 29617 A 5 5
60 Brunei 29618 A 5 5
61 Brunei 29619 T 5 5
62 Brunei 29620 G 5 5
63 Brunei 29621 A 5 5
64 Brunei 29622 A 5 5
65 Brunei 29623 T 5 5
66 Brunei 29624 T 5 5
67 Brunei 29625 C 5 5
68 Brunei 29626 T 5 5
69 Brunei 29627 C 5 5
70 Brunei 29628 G 5 5
71 Brunei 29629 T 5 5
72 Brunei 29630 A 5 5
73 Brunei 29631 A 5 5
74 Brunei 29632 C 5 5
75 Brunei 29633 T 5 5
76 Brunei 29634 A 5 5
77 Brunei 29635 C 5 5
78 Brunei 29636 A 5 5
79 Brunei 29637 T 5 5
80 Brunei 29638 A 5 5
81 Brunei 29639 G 5 5
82 Brunei 29640 C 5 5
83 Brunei 29641 A 5 5
84 Brunei 29642 C 5 5
85 Brunei 29643 A 5 5
86 Brunei 29644 A 5 5
87 Brunei 29645 G 5 5
88 Brunei 29646 T 5 5
89 Brunei 29647 A 5 5
90 Brunei 29648 G 5 5
91 Brunei 29649 A 5 5
92 Brunei 29650 T 5 5
93 Brunei 29651 G 5 5
94 Brunei 29652 T 5 5
95 Brunei 29653 A 5 5
96 Brunei 29654 G 5 5
97 Brunei 29655 T 5 5
98 Brunei 29656 T 5 5
99 Brunei 29657 A 5 5
100 Brunei 29658 A 5 5
101 Brunei 29659 C 5 5
102 Brunei 29660 T 5 5
103 Brunei 29661 T 5 5
104 Brunei 29662 T 5 5
105 Brunei 29663 A 5 5
106 Brunei 29664 A 5 5
107 Brunei 29665 T 5 5
108 Brunei 29666 C 5 5
109 Brunei 29667 T 5 5
110 Brunei 29668 C 5 5
111 Brunei 29669 A 5 5
112 Brunei 29670 C 5 5
113 Brunei 29671 A 5 5
114 Brunei 29672 T 5 5
115 Brunei 29673 A 5 5
116 Brunei 29674 G 5 5