National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                             1  
C     3   1                            
D     3                               1
F     12       1                        
G     3                                
I     9                             1  
L     12       1                        
M     6                                
N     16                 1       1      
P     3                         1      
Q 1   3                                
R     6           1                    
S     6                                
T     6           1               1    
V     12             2                  
Y     9   1                           1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Brazil 29558 A 2145 2145
1 Brazil 29559 T 2145 2145
2 Brazil 29560 G 2145 2145
3 Brazil 29561 G 2145 2145
4 Brazil 29562 G 2145 2145
5 Brazil 29563 C 2145 2145
6 Brazil 29564 T 2145 2145
7 Brazil 29565 A G 2145 2143 Tyr3Cys
8 Brazil 29566 T 2145 2145
9 Brazil 29567 A G 2145 2144 Ile4Val
10 Brazil 29568 T 2145 2145
11 Brazil 29569 A 2145 2145
12 Brazil 29570 A 2145 2145
13 Brazil 29571 A 2145 2145
14 Brazil 29572 C 2145 2144
15 Brazil 29573 G 2145 2144
16 Brazil 29574 T 2145 2143
17 Brazil 29575 T 2145 2144
18 Brazil 29576 T 2145 2144
19 Brazil 29577 T 2145 2144
20 Brazil 29578 C T 2145 2144 Phe7Phe
21 Brazil 29579 G 2145 2144
22 Brazil 29580 C 2145 2145
23 Brazil 29581 T 2145 2144
24 Brazil 29582 T 2145 2145
25 Brazil 29583 T 2145 2145
26 Brazil 29584 T 2145 2145
27 Brazil 29585 C T 2145 2144 Pro10Ser
28 Brazil 29586 C 2145 2144
29 Brazil 29587 G 2145 2145
30 Brazil 29588 T 2145 2145
31 Brazil 29589 T 2145 2145
32 Brazil 29590 T 2145 2145
33 Brazil 29591 A 2145 2145
34 Brazil 29592 C 2145 2145
35 Brazil 29593 G A 2145 2144 Thr12Thr
36 Brazil 29594 A 2145 2144
37 Brazil 29595 T 2145 2144
38 Brazil 29596 A 2145 2145
39 Brazil 29597 T 2145 2145
40 Brazil 29598 A 2145 2145
41 Brazil 29599 T 2145 2145
42 Brazil 29600 A 2145 2145
43 Brazil 29601 G 2145 2145
44 Brazil 29602 T 2145 2145
45 Brazil 29603 C 2145 2145
46 Brazil 29604 T 2145 2145
47 Brazil 29605 A 2145 2145
48 Brazil 29606 C 2145 2144
49 Brazil 29607 T 2145 2144
50 Brazil 29608 C 2145 2144
51 Brazil 29609 T 2145 2145
52 Brazil 29610 T 2145 2145
53 Brazil 29611 G 2145 2145
54 Brazil 29612 T 2145 2145
55 Brazil 29613 G 2145 2145
56 Brazil 29614 C T 2145 2140 Cys19Cys
57 Brazil 29615 A 2145 2145
58 Brazil 29616 G T 2145 2144 Arg20Ile
59 Brazil 29617 A 2145 2145
60 Brazil 29618 A 2145 2145
61 Brazil 29619 T 2145 2145
62 Brazil 29620 G 2145 2144
63 Brazil 29621 A 2145 2145
64 Brazil 29622 A G 2145 2141 Asn22Ser
65 Brazil 29623 T 2145 2145
66 Brazil 29624 T 2145 2145
67 Brazil 29625 C 2145 2145
68 Brazil 29626 T 2145 2144
69 Brazil 29627 C 2145 2144
70 Brazil 29628 G 2145 2145
71 Brazil 29629 T 2145 2145
72 Brazil 29630 A 2145 2145
73 Brazil 29631 A 2145 2145
74 Brazil 29632 C T 2145 2144 Asn25Asn
75 Brazil 29633 T 2145 2145
76 Brazil 29634 A 2145 2145
77 Brazil 29635 C T 2145 2143 Tyr26Tyr
78 Brazil 29636 A 2145 2145
79 Brazil 29637 T 2145 2145
80 Brazil 29638 A 2145 2145
81 Brazil 29639 G 2145 2145
82 Brazil 29640 C T 2145 2139 Ala28Val
83 Brazil 29641 A 2145 2145
84 Brazil 29642 C T 2145 2143 Gln29*
85 Brazil 29643 A 2145 2145
86 Brazil 29644 A 2145 2145
87 Brazil 29645 G T 2122 2121 Val30Leu
88 Brazil 29646 T 2122 2122
89 Brazil 29647 A 2121 2121
90 Brazil 29648 G T 2121 2118 Asp31Tyr
91 Brazil 29649 A 2121 2121
92 Brazil 29650 T 2121 2121
93 Brazil 29651 G T 2121 2120 Val32Leu
94 Brazil 29652 T 2120 2120
95 Brazil 29653 A 2120 2120
96 Brazil 29654 G 2120 2120
97 Brazil 29655 T 2120 2120
98 Brazil 29656 T 2120 2120
99 Brazil 29657 A 2120 2120
100 Brazil 29658 A 2120 2120
101 Brazil 29659 C 2120 2120
102 Brazil 29660 T 2120 2120
103 Brazil 29661 T 2120 2120
104 Brazil 29662 T 2120 2120
105 Brazil 29663 A 2120 2120
106 Brazil 29664 A 2120 2120
107 Brazil 29665 T 2120 2120
108 Brazil 29666 C T 1927 1923 Leu37Phe
109 Brazil 29667 T 1927 1927
110 Brazil 29668 C 1927 1927
111 Brazil 29669 A 1927 1927
112 Brazil 29670 C T 1927 1926 Thr38Ile
113 Brazil 29671 A 1927 1927
114 Brazil 29672 T 1927 1927
115 Brazil 29673 A 1927 1927
116 Brazil 29674 G 1927 1927