National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Botswana 29558 A 13 13
1 Botswana 29559 T 13 13
2 Botswana 29560 G 13 13
3 Botswana 29561 G 13 13
4 Botswana 29562 G 13 13
5 Botswana 29563 C 13 13
6 Botswana 29564 T 13 13
7 Botswana 29565 A 13 13
8 Botswana 29566 T 13 13
9 Botswana 29567 A 13 13
10 Botswana 29568 T 13 13
11 Botswana 29569 A 13 13
12 Botswana 29570 A 13 13
13 Botswana 29571 A 13 13
14 Botswana 29572 C 13 13
15 Botswana 29573 G 13 13
16 Botswana 29574 T 13 13
17 Botswana 29575 T 13 13
18 Botswana 29576 T 13 13
19 Botswana 29577 T 13 13
20 Botswana 29578 C 13 13
21 Botswana 29579 G 13 13
22 Botswana 29580 C 13 13
23 Botswana 29581 T 13 13
24 Botswana 29582 T 13 13
25 Botswana 29583 T 13 13
26 Botswana 29584 T 13 13
27 Botswana 29585 C 13 13
28 Botswana 29586 C 13 13
29 Botswana 29587 G 13 13
30 Botswana 29588 T 13 13
31 Botswana 29589 T 13 13
32 Botswana 29590 T 13 13
33 Botswana 29591 A 13 13
34 Botswana 29592 C 13 13
35 Botswana 29593 G 13 13
36 Botswana 29594 A 13 13
37 Botswana 29595 T 13 13
38 Botswana 29596 A 13 13
39 Botswana 29597 T 13 13
40 Botswana 29598 A 13 13
41 Botswana 29599 T 13 13
42 Botswana 29600 A 13 13
43 Botswana 29601 G 13 13
44 Botswana 29602 T 13 13
45 Botswana 29603 C 13 13
46 Botswana 29604 T 13 13
47 Botswana 29605 A 13 13
48 Botswana 29606 C 13 13
49 Botswana 29607 T 13 13
50 Botswana 29608 C 13 13
51 Botswana 29609 T 13 13
52 Botswana 29610 T 13 13
53 Botswana 29611 G 13 13
54 Botswana 29612 T 13 13
55 Botswana 29613 G 13 13
56 Botswana 29614 C 13 13
57 Botswana 29615 A 13 13
58 Botswana 29616 G 13 13
59 Botswana 29617 A 13 13
60 Botswana 29618 A 13 13
61 Botswana 29619 T 13 13
62 Botswana 29620 G 13 13
63 Botswana 29621 A 13 13
64 Botswana 29622 A 13 13
65 Botswana 29623 T 13 13
66 Botswana 29624 T 13 13
67 Botswana 29625 C 13 13
68 Botswana 29626 T 13 13
69 Botswana 29627 C 13 13
70 Botswana 29628 G 13 13
71 Botswana 29629 T 13 13
72 Botswana 29630 A 13 13
73 Botswana 29631 A 13 13
74 Botswana 29632 C 13 13
75 Botswana 29633 T 13 13
76 Botswana 29634 A 13 13
77 Botswana 29635 C 13 13
78 Botswana 29636 A 13 13
79 Botswana 29637 T 13 13
80 Botswana 29638 A 13 13
81 Botswana 29639 G 13 13
82 Botswana 29640 C 13 13
83 Botswana 29641 A 13 13
84 Botswana 29642 C 13 13
85 Botswana 29643 A 13 13
86 Botswana 29644 A 13 13
87 Botswana 29645 G 13 13
88 Botswana 29646 T 13 13
89 Botswana 29647 A 13 13
90 Botswana 29648 G 13 13
91 Botswana 29649 A 13 13
92 Botswana 29650 T 13 13
93 Botswana 29651 G 13 13
94 Botswana 29652 T 13 13
95 Botswana 29653 A 13 13
96 Botswana 29654 G 13 13
97 Botswana 29655 T 13 13
98 Botswana 29656 T 13 13
99 Botswana 29657 A 13 13
100 Botswana 29658 A 13 13
101 Botswana 29659 C 13 13
102 Botswana 29660 T 13 13
103 Botswana 29661 T 13 13
104 Botswana 29662 T 13 13
105 Botswana 29663 A 13 13
106 Botswana 29664 A 13 13
107 Botswana 29665 T 13 13
108 Botswana 29666 C 13 13
109 Botswana 29667 T 13 13
110 Botswana 29668 C 13 13
111 Botswana 29669 A 13 13
112 Botswana 29670 C 13 13
113 Botswana 29671 A 13 13
114 Botswana 29672 T 13 13
115 Botswana 29673 A 13 13
116 Botswana 29674 G 13 13