National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bosnia_and_Herzegovina 29558 A 33 33
1 Bosnia_and_Herzegovina 29559 T 33 33
2 Bosnia_and_Herzegovina 29560 G 33 33
3 Bosnia_and_Herzegovina 29561 G 33 33
4 Bosnia_and_Herzegovina 29562 G 33 33
5 Bosnia_and_Herzegovina 29563 C 33 33
6 Bosnia_and_Herzegovina 29564 T 33 33
7 Bosnia_and_Herzegovina 29565 A 33 33
8 Bosnia_and_Herzegovina 29566 T 33 33
9 Bosnia_and_Herzegovina 29567 A 33 33
10 Bosnia_and_Herzegovina 29568 T 33 33
11 Bosnia_and_Herzegovina 29569 A 33 33
12 Bosnia_and_Herzegovina 29570 A 33 33
13 Bosnia_and_Herzegovina 29571 A 33 33
14 Bosnia_and_Herzegovina 29572 C 33 33
15 Bosnia_and_Herzegovina 29573 G 33 33
16 Bosnia_and_Herzegovina 29574 T 33 33
17 Bosnia_and_Herzegovina 29575 T 33 33
18 Bosnia_and_Herzegovina 29576 T 33 33
19 Bosnia_and_Herzegovina 29577 T 33 33
20 Bosnia_and_Herzegovina 29578 C 33 33
21 Bosnia_and_Herzegovina 29579 G 33 33
22 Bosnia_and_Herzegovina 29580 C 33 33
23 Bosnia_and_Herzegovina 29581 T 33 33
24 Bosnia_and_Herzegovina 29582 T 33 33
25 Bosnia_and_Herzegovina 29583 T 33 33
26 Bosnia_and_Herzegovina 29584 T 33 33
27 Bosnia_and_Herzegovina 29585 C 33 33
28 Bosnia_and_Herzegovina 29586 C 33 33
29 Bosnia_and_Herzegovina 29587 G 33 33
30 Bosnia_and_Herzegovina 29588 T 33 33
31 Bosnia_and_Herzegovina 29589 T 33 33
32 Bosnia_and_Herzegovina 29590 T 33 33
33 Bosnia_and_Herzegovina 29591 A 33 33
34 Bosnia_and_Herzegovina 29592 C 33 33
35 Bosnia_and_Herzegovina 29593 G 33 33
36 Bosnia_and_Herzegovina 29594 A 33 33
37 Bosnia_and_Herzegovina 29595 T 33 33
38 Bosnia_and_Herzegovina 29596 A 33 33
39 Bosnia_and_Herzegovina 29597 T 33 33
40 Bosnia_and_Herzegovina 29598 A 33 33
41 Bosnia_and_Herzegovina 29599 T 33 33
42 Bosnia_and_Herzegovina 29600 A 33 33
43 Bosnia_and_Herzegovina 29601 G 33 33
44 Bosnia_and_Herzegovina 29602 T 33 33
45 Bosnia_and_Herzegovina 29603 C 33 33
46 Bosnia_and_Herzegovina 29604 T 33 33
47 Bosnia_and_Herzegovina 29605 A 33 33
48 Bosnia_and_Herzegovina 29606 C 33 33
49 Bosnia_and_Herzegovina 29607 T 33 33
50 Bosnia_and_Herzegovina 29608 C 33 33
51 Bosnia_and_Herzegovina 29609 T 33 33
52 Bosnia_and_Herzegovina 29610 T 33 33
53 Bosnia_and_Herzegovina 29611 G 33 33
54 Bosnia_and_Herzegovina 29612 T 33 33
55 Bosnia_and_Herzegovina 29613 G 33 33
56 Bosnia_and_Herzegovina 29614 C 33 33
57 Bosnia_and_Herzegovina 29615 A 33 33
58 Bosnia_and_Herzegovina 29616 G 33 33
59 Bosnia_and_Herzegovina 29617 A 33 33
60 Bosnia_and_Herzegovina 29618 A 33 33
61 Bosnia_and_Herzegovina 29619 T 33 33
62 Bosnia_and_Herzegovina 29620 G 33 33
63 Bosnia_and_Herzegovina 29621 A 33 33
64 Bosnia_and_Herzegovina 29622 A 33 33
65 Bosnia_and_Herzegovina 29623 T 33 33
66 Bosnia_and_Herzegovina 29624 T 33 33
67 Bosnia_and_Herzegovina 29625 C 33 33
68 Bosnia_and_Herzegovina 29626 T 33 33
69 Bosnia_and_Herzegovina 29627 C 33 33
70 Bosnia_and_Herzegovina 29628 G 33 33
71 Bosnia_and_Herzegovina 29629 T 33 33
72 Bosnia_and_Herzegovina 29630 A 33 33
73 Bosnia_and_Herzegovina 29631 A 33 33
74 Bosnia_and_Herzegovina 29632 C 33 33
75 Bosnia_and_Herzegovina 29633 T 33 33
76 Bosnia_and_Herzegovina 29634 A 33 33
77 Bosnia_and_Herzegovina 29635 C 33 33
78 Bosnia_and_Herzegovina 29636 A 33 33
79 Bosnia_and_Herzegovina 29637 T 33 33
80 Bosnia_and_Herzegovina 29638 A 33 33
81 Bosnia_and_Herzegovina 29639 G 33 33
82 Bosnia_and_Herzegovina 29640 C 33 33
83 Bosnia_and_Herzegovina 29641 A 33 33
84 Bosnia_and_Herzegovina 29642 C 33 33
85 Bosnia_and_Herzegovina 29643 A 33 33
86 Bosnia_and_Herzegovina 29644 A 33 33
87 Bosnia_and_Herzegovina 29645 G 33 33
88 Bosnia_and_Herzegovina 29646 T 33 33
89 Bosnia_and_Herzegovina 29647 A 33 33
90 Bosnia_and_Herzegovina 29648 G 33 33
91 Bosnia_and_Herzegovina 29649 A 33 33
92 Bosnia_and_Herzegovina 29650 T 33 33
93 Bosnia_and_Herzegovina 29651 G 33 33
94 Bosnia_and_Herzegovina 29652 T 33 33
95 Bosnia_and_Herzegovina 29653 A 33 33
96 Bosnia_and_Herzegovina 29654 G 33 33
97 Bosnia_and_Herzegovina 29655 T 33 33
98 Bosnia_and_Herzegovina 29656 T 33 33
99 Bosnia_and_Herzegovina 29657 A 33 33
100 Bosnia_and_Herzegovina 29658 A 33 33
101 Bosnia_and_Herzegovina 29659 C 33 33
102 Bosnia_and_Herzegovina 29660 T 33 33
103 Bosnia_and_Herzegovina 29661 T 33 33
104 Bosnia_and_Herzegovina 29662 T 33 33
105 Bosnia_and_Herzegovina 29663 A 33 33
106 Bosnia_and_Herzegovina 29664 A 33 33
107 Bosnia_and_Herzegovina 29665 T 33 33
108 Bosnia_and_Herzegovina 29666 C 33 33
109 Bosnia_and_Herzegovina 29667 T 33 33
110 Bosnia_and_Herzegovina 29668 C 33 33
111 Bosnia_and_Herzegovina 29669 A 33 33
112 Bosnia_and_Herzegovina 29670 C 33 33
113 Bosnia_and_Herzegovina 29671 A 33 33
114 Bosnia_and_Herzegovina 29672 T 33 33
115 Bosnia_and_Herzegovina 29673 A 33 33
116 Bosnia_and_Herzegovina 29674 G 33 33