National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                         1      
T     6           1                    
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bolivia 29558 A 27 27
1 Bolivia 29559 T 27 27
2 Bolivia 29560 G 27 27
3 Bolivia 29561 G 27 27
4 Bolivia 29562 G 27 27
5 Bolivia 29563 C 27 27
6 Bolivia 29564 T 27 27
7 Bolivia 29565 A 27 27
8 Bolivia 29566 T 27 27
9 Bolivia 29567 A 27 27
10 Bolivia 29568 T 27 27
11 Bolivia 29569 A 27 27
12 Bolivia 29570 A 27 27
13 Bolivia 29571 A 27 27
14 Bolivia 29572 C 27 27
15 Bolivia 29573 G 27 27
16 Bolivia 29574 T 27 27
17 Bolivia 29575 T 27 27
18 Bolivia 29576 T 27 27
19 Bolivia 29577 T 27 27
20 Bolivia 29578 C 27 27
21 Bolivia 29579 G 27 27
22 Bolivia 29580 C 27 27
23 Bolivia 29581 T 27 27
24 Bolivia 29582 T 27 27
25 Bolivia 29583 T 27 27
26 Bolivia 29584 T 27 27
27 Bolivia 29585 C 27 27
28 Bolivia 29586 C 27 27
29 Bolivia 29587 G 27 27
30 Bolivia 29588 T 27 27
31 Bolivia 29589 T 27 27
32 Bolivia 29590 T 27 27
33 Bolivia 29591 A 27 27
34 Bolivia 29592 C 27 27
35 Bolivia 29593 G 27 27
36 Bolivia 29594 A 27 27
37 Bolivia 29595 T 27 27
38 Bolivia 29596 A 27 27
39 Bolivia 29597 T 27 27
40 Bolivia 29598 A 27 27
41 Bolivia 29599 T 27 27
42 Bolivia 29600 A 27 27
43 Bolivia 29601 G 27 27
44 Bolivia 29602 T 27 27
45 Bolivia 29603 C 27 27
46 Bolivia 29604 T 27 27
47 Bolivia 29605 A 27 27
48 Bolivia 29606 C 27 27
49 Bolivia 29607 T 27 27
50 Bolivia 29608 C 27 27
51 Bolivia 29609 T 27 27
52 Bolivia 29610 T 27 27
53 Bolivia 29611 G 27 27
54 Bolivia 29612 T 27 27
55 Bolivia 29613 G 27 27
56 Bolivia 29614 C 27 27
57 Bolivia 29615 A 27 27
58 Bolivia 29616 G 27 27
59 Bolivia 29617 A 27 27
60 Bolivia 29618 A 27 27
61 Bolivia 29619 T 27 27
62 Bolivia 29620 G 27 27
63 Bolivia 29621 A 27 27
64 Bolivia 29622 A 27 27
65 Bolivia 29623 T 27 27
66 Bolivia 29624 T 27 27
67 Bolivia 29625 C 27 27
68 Bolivia 29626 T C 27 26 Ser23Ser
69 Bolivia 29627 C 27 27
70 Bolivia 29628 G 27 27
71 Bolivia 29629 T 27 27
72 Bolivia 29630 A 27 27
73 Bolivia 29631 A 27 27
74 Bolivia 29632 C 27 27
75 Bolivia 29633 T 27 27
76 Bolivia 29634 A 27 27
77 Bolivia 29635 C 27 27
78 Bolivia 29636 A 27 27
79 Bolivia 29637 T 27 27
80 Bolivia 29638 A 27 27
81 Bolivia 29639 G 27 27
82 Bolivia 29640 C 27 27
83 Bolivia 29641 A 27 27
84 Bolivia 29642 C 27 27
85 Bolivia 29643 A 27 27
86 Bolivia 29644 A 27 27
87 Bolivia 29645 G 27 27
88 Bolivia 29646 T 27 27
89 Bolivia 29647 A 27 27
90 Bolivia 29648 G 27 27
91 Bolivia 29649 A 27 27
92 Bolivia 29650 T 27 27
93 Bolivia 29651 G 27 27
94 Bolivia 29652 T 27 27
95 Bolivia 29653 A 27 27
96 Bolivia 29654 G 27 27
97 Bolivia 29655 T 27 27
98 Bolivia 29656 T 27 27
99 Bolivia 29657 A 27 27
100 Bolivia 29658 A 27 27
101 Bolivia 29659 C 27 27
102 Bolivia 29660 T 27 27
103 Bolivia 29661 T 27 27
104 Bolivia 29662 T 27 27
105 Bolivia 29663 A 27 27
106 Bolivia 29664 A 27 27
107 Bolivia 29665 T 27 27
108 Bolivia 29666 C 27 27
109 Bolivia 29667 T 27 27
110 Bolivia 29668 C 27 27
111 Bolivia 29669 A 27 27
112 Bolivia 29670 C T 27 23 Thr38Ile
113 Bolivia 29671 A 27 27
114 Bolivia 29672 T 27 27
115 Bolivia 29673 A 27 27
116 Bolivia 29674 G 27 27