National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Benin 29558 A 12 12
1 Benin 29559 T 12 12
2 Benin 29560 G 12 12
3 Benin 29561 G 12 12
4 Benin 29562 G 12 12
5 Benin 29563 C 12 12
6 Benin 29564 T 12 12
7 Benin 29565 A 12 12
8 Benin 29566 T 12 12
9 Benin 29567 A 12 12
10 Benin 29568 T 12 12
11 Benin 29569 A 12 12
12 Benin 29570 A 12 12
13 Benin 29571 A 12 12
14 Benin 29572 C 12 12
15 Benin 29573 G 12 12
16 Benin 29574 T 12 12
17 Benin 29575 T 12 12
18 Benin 29576 T 12 12
19 Benin 29577 T 12 12
20 Benin 29578 C 12 12
21 Benin 29579 G 12 12
22 Benin 29580 C 12 12
23 Benin 29581 T 12 12
24 Benin 29582 T 12 12
25 Benin 29583 T 12 12
26 Benin 29584 T 12 12
27 Benin 29585 C 12 12
28 Benin 29586 C 12 12
29 Benin 29587 G 12 12
30 Benin 29588 T 12 12
31 Benin 29589 T 12 12
32 Benin 29590 T 12 12
33 Benin 29591 A 12 12
34 Benin 29592 C 12 12
35 Benin 29593 G 12 12
36 Benin 29594 A 12 12
37 Benin 29595 T 12 12
38 Benin 29596 A 12 12
39 Benin 29597 T 12 12
40 Benin 29598 A 12 12
41 Benin 29599 T 12 12
42 Benin 29600 A 12 12
43 Benin 29601 G 12 12
44 Benin 29602 T 12 12
45 Benin 29603 C 12 12
46 Benin 29604 T 12 12
47 Benin 29605 A 12 12
48 Benin 29606 C 12 12
49 Benin 29607 T 12 12
50 Benin 29608 C 12 12
51 Benin 29609 T 12 12
52 Benin 29610 T 12 12
53 Benin 29611 G 12 12
54 Benin 29612 T 12 12
55 Benin 29613 G 12 12
56 Benin 29614 C 12 12
57 Benin 29615 A 12 12
58 Benin 29616 G 12 12
59 Benin 29617 A 12 12
60 Benin 29618 A 12 12
61 Benin 29619 T 12 12
62 Benin 29620 G 12 12
63 Benin 29621 A 12 12
64 Benin 29622 A 12 12
65 Benin 29623 T 12 12
66 Benin 29624 T 12 12
67 Benin 29625 C 12 12
68 Benin 29626 T 12 12
69 Benin 29627 C 12 12
70 Benin 29628 G 12 12
71 Benin 29629 T 12 12
72 Benin 29630 A 12 12
73 Benin 29631 A 12 12
74 Benin 29632 C 12 12
75 Benin 29633 T 12 12
76 Benin 29634 A 12 12
77 Benin 29635 C 12 12
78 Benin 29636 A 12 12
79 Benin 29637 T 12 12
80 Benin 29638 A 12 12
81 Benin 29639 G 12 12
82 Benin 29640 C 12 12
83 Benin 29641 A 12 12
84 Benin 29642 C 12 12
85 Benin 29643 A 12 12
86 Benin 29644 A 12 12
87 Benin 29645 G 12 12
88 Benin 29646 T 12 12
89 Benin 29647 A 12 12
90 Benin 29648 G 12 12
91 Benin 29649 A 12 12
92 Benin 29650 T 12 12
93 Benin 29651 G 12 12
94 Benin 29652 T 12 12
95 Benin 29653 A 12 12
96 Benin 29654 G 12 12
97 Benin 29655 T 12 12
98 Benin 29656 T 12 12
99 Benin 29657 A 12 12
100 Benin 29658 A 12 12
101 Benin 29659 C 12 12
102 Benin 29660 T 12 12
103 Benin 29661 T 12 12
104 Benin 29662 T 12 12
105 Benin 29663 A 12 12
106 Benin 29664 A 12 12
107 Benin 29665 T 12 12
108 Benin 29666 C 12 12
109 Benin 29667 T 12 12
110 Benin 29668 C 12 12
111 Benin 29669 A 12 12
112 Benin 29670 C 12 12
113 Benin 29671 A 12 12
114 Benin 29672 T 12 12
115 Benin 29673 A 12 12
116 Benin 29674 G 12 12