National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                         1   1  
C     3   1                            
D     3                               1
F     12             1           1      
G     3                                
I     9                             1  
L     12                                
M     6                                
N     16                 2              
P     3                   1     1      
Q 1   3                                
R     6   1                            
S     6       1 1               1      
T     6                                
V     12             1                  
Y     9   1                           1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Belgium 29558 A 3689 3689
1 Belgium 29559 T 3689 3689
2 Belgium 29560 G 3689 3689
3 Belgium 29561 G 3689 3689
4 Belgium 29562 G 3689 3689
5 Belgium 29563 C 3689 3689
6 Belgium 29564 T 3689 3689
7 Belgium 29565 A 3689 3689
8 Belgium 29566 T 3689 3689
9 Belgium 29567 A G 3689 3688 Ile4Val
10 Belgium 29568 T 3689 3689
11 Belgium 29569 A 3689 3689
12 Belgium 29570 A 3689 3689
13 Belgium 29571 A 3689 3689
14 Belgium 29572 C 3689 3689
15 Belgium 29573 G 3689 3689
16 Belgium 29574 T 3689 3689
17 Belgium 29575 T 3689 3689
18 Belgium 29576 T 3689 3689
19 Belgium 29577 T 3689 3689
20 Belgium 29578 C A 3689 3688 Phe7Leu
21 Belgium 29579 G 3689 3689
22 Belgium 29580 C T 3689 3686 Ala8Val
23 Belgium 29581 T 3689 3689
24 Belgium 29582 T 3689 3689
25 Belgium 29583 T 3689 3689
26 Belgium 29584 T 3689 3689
27 Belgium 29585 C T 3689 3687 Pro10Ser
28 Belgium 29586 C 3689 3689
29 Belgium 29587 G T 3689 3688 Pro10Pro
30 Belgium 29588 T 3689 3689
31 Belgium 29589 T C 3689 3687 Phe11Ser
32 Belgium 29590 T 3689 3689
33 Belgium 29591 A 3689 3689
34 Belgium 29592 C 3689 3689
35 Belgium 29593 G 3689 3689
36 Belgium 29594 A 3689 3689
37 Belgium 29595 T 3689 3689
38 Belgium 29596 A 3689 3689
39 Belgium 29597 T 3689 3689
40 Belgium 29598 A G 3689 3655 Tyr14Cys
41 Belgium 29599 T 3689 3689
42 Belgium 29600 A G 3689 3688 Ser15Gly
43 Belgium 29601 G 3689 3689
44 Belgium 29602 T 3689 3689
45 Belgium 29603 C 3689 3689
46 Belgium 29604 T 3689 3689
47 Belgium 29605 A 3689 3689
48 Belgium 29606 C 3689 3689
49 Belgium 29607 T 3689 3689
50 Belgium 29608 C 3689 3689
51 Belgium 29609 T 3689 3689
52 Belgium 29610 T 3689 3689
53 Belgium 29611 G 3689 3689
54 Belgium 29612 T 3689 3689
55 Belgium 29613 G 3689 3689
56 Belgium 29614 C T 3689 3687 Cys19Cys
57 Belgium 29615 A 3689 3689
58 Belgium 29616 G 3689 3689
59 Belgium 29617 A 3689 3689
60 Belgium 29618 A 3689 3689
61 Belgium 29619 T 3689 3689
62 Belgium 29620 G 3689 3689
63 Belgium 29621 A 3689 3689
64 Belgium 29622 A 3689 3689
65 Belgium 29623 T 3689 3689
66 Belgium 29624 T 3689 3689
67 Belgium 29625 C T 3689 3684 Ser23Phe
68 Belgium 29626 T A 3689 3688 Ser23Ser
69 Belgium 29627 C T 3689 3688 Arg24Cys
70 Belgium 29628 G 3689 3688
71 Belgium 29629 T 3689 3689
72 Belgium 29630 A 3689 3689
73 Belgium 29631 A 3689 3689
74 Belgium 29632 C 3689 3689
75 Belgium 29633 T 3689 3689
76 Belgium 29634 A 3689 3689
77 Belgium 29635 C T 3690 3689 Tyr26Tyr
78 Belgium 29636 A 3690 3690
79 Belgium 29637 T 3690 3690
80 Belgium 29638 A 3690 3690
81 Belgium 29639 G T 3690 3689 Ala28Ser
82 Belgium 29640 C 3690 3690
83 Belgium 29641 A 3690 3690
84 Belgium 29642 C T 3690 3689 Gln29*
85 Belgium 29643 A 3690 3690
86 Belgium 29644 A 3690 3690
87 Belgium 29645 G T 3690 3312 Val30Leu
88 Belgium 29646 T 3690 3690
89 Belgium 29647 A 3690 3690
90 Belgium 29648 G T 3690 3689 Asp31Tyr
91 Belgium 29649 A 3690 3690
92 Belgium 29650 T 3690 3690
93 Belgium 29651 G 3690 3690
94 Belgium 29652 T 3690 3690
95 Belgium 29653 A 3690 3690
96 Belgium 29654 G 3690 3690
97 Belgium 29655 T 3690 3690
98 Belgium 29656 T 3690 3690
99 Belgium 29657 A 3690 3690
100 Belgium 29658 A 3690 3690
101 Belgium 29659 C T 3690 3689 Asn34Asn
102 Belgium 29660 T 3690 3690
103 Belgium 29661 T 3690 3690
104 Belgium 29662 T 3690 3690
105 Belgium 29663 A 3690 3690
106 Belgium 29664 A 3690 3690
107 Belgium 29665 T C 3690 3674 Asn36Asn
108 Belgium 29666 C 3679 3679
109 Belgium 29667 T 3679 3679
110 Belgium 29668 C 3679 3679
111 Belgium 29669 A 3679 3679
112 Belgium 29670 C 3679 3679
113 Belgium 29671 A 3679 3679
114 Belgium 29672 T 3679 3679
115 Belgium 29673 A 3679 3679
116 Belgium 29674 G 3679 3679