National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3   1                            
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                       1        
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Belarus 29558 A 35 35
1 Belarus 29559 T 35 35
2 Belarus 29560 G 35 35
3 Belarus 29561 G 35 35
4 Belarus 29562 G 35 35
5 Belarus 29563 C 35 35
6 Belarus 29564 T 35 35
7 Belarus 29565 A 35 35
8 Belarus 29566 T 35 35
9 Belarus 29567 A 35 35
10 Belarus 29568 T 35 35
11 Belarus 29569 A 35 35
12 Belarus 29570 A 35 35
13 Belarus 29571 A 35 35
14 Belarus 29572 C 35 35
15 Belarus 29573 G 35 35
16 Belarus 29574 T 35 35
17 Belarus 29575 T 35 35
18 Belarus 29576 T 35 35
19 Belarus 29577 T 35 35
20 Belarus 29578 C 35 35
21 Belarus 29579 G 35 35
22 Belarus 29580 C 35 35
23 Belarus 29581 T 35 35
24 Belarus 29582 T 35 35
25 Belarus 29583 T 35 35
26 Belarus 29584 T 35 35
27 Belarus 29585 C 35 35
28 Belarus 29586 C 35 35
29 Belarus 29587 G 35 35
30 Belarus 29588 T 35 35
31 Belarus 29589 T 35 35
32 Belarus 29590 T 35 35
33 Belarus 29591 A 35 35
34 Belarus 29592 C 35 35
35 Belarus 29593 G 35 35
36 Belarus 29594 A 35 35
37 Belarus 29595 T 35 35
38 Belarus 29596 A 35 35
39 Belarus 29597 T 35 35
40 Belarus 29598 A 35 35
41 Belarus 29599 T 35 35
42 Belarus 29600 A 35 35
43 Belarus 29601 G 35 35
44 Belarus 29602 T 35 35
45 Belarus 29603 C 35 35
46 Belarus 29604 T 35 35
47 Belarus 29605 A 35 35
48 Belarus 29606 C 35 35
49 Belarus 29607 T 35 35
50 Belarus 29608 C 35 35
51 Belarus 29609 T 35 35
52 Belarus 29610 T 35 35
53 Belarus 29611 G 35 35
54 Belarus 29612 T 35 35
55 Belarus 29613 G 35 35
56 Belarus 29614 C T 35 34 Cys19Cys
57 Belarus 29615 A 35 35
58 Belarus 29616 G 35 35
59 Belarus 29617 A 35 35
60 Belarus 29618 A 35 35
61 Belarus 29619 T 35 35
62 Belarus 29620 G 35 35
63 Belarus 29621 A 35 35
64 Belarus 29622 A 35 35
65 Belarus 29623 T 35 35
66 Belarus 29624 T 35 35
67 Belarus 29625 C 35 35
68 Belarus 29626 T 35 35
69 Belarus 29627 C 35 35
70 Belarus 29628 G 35 35
71 Belarus 29629 T C 35 34 Arg24Arg
72 Belarus 29630 A 35 35
73 Belarus 29631 A 35 35
74 Belarus 29632 C 35 35
75 Belarus 29633 T 35 35
76 Belarus 29634 A 35 35
77 Belarus 29635 C 35 35
78 Belarus 29636 A 35 35
79 Belarus 29637 T 35 35
80 Belarus 29638 A 35 35
81 Belarus 29639 G 35 35
82 Belarus 29640 C 35 35
83 Belarus 29641 A 35 35
84 Belarus 29642 C 35 35
85 Belarus 29643 A 35 35
86 Belarus 29644 A 35 35
87 Belarus 29645 G 35 35
88 Belarus 29646 T 35 35
89 Belarus 29647 A 35 35
90 Belarus 29648 G 35 35
91 Belarus 29649 A 35 35
92 Belarus 29650 T 35 35
93 Belarus 29651 G 35 35
94 Belarus 29652 T 35 35
95 Belarus 29653 A 35 35
96 Belarus 29654 G 35 35
97 Belarus 29655 T 35 35
98 Belarus 29656 T 35 35
99 Belarus 29657 A 35 35
100 Belarus 29658 A 35 35
101 Belarus 29659 C 35 35
102 Belarus 29660 T 35 35
103 Belarus 29661 T 35 35
104 Belarus 29662 T 35 35
105 Belarus 29663 A 35 35
106 Belarus 29664 A 35 35
107 Belarus 29665 T 35 35
108 Belarus 29666 C 35 35
109 Belarus 29667 T 35 35
110 Belarus 29668 C 35 35
111 Belarus 29669 A 35 35
112 Belarus 29670 C 35 35
113 Belarus 29671 A 35 35
114 Belarus 29672 T 35 35
115 Belarus 29673 A 35 35
116 Belarus 29674 G 35 35