National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G H I L M N P Q R S T V Y
*     2                                  
-     117                                  
?                                        
A     6                                  
C     3   1                              
D     3                                  
F     12               1           1      
G     3                                  
H                                        
I     9                                  
L     12       1                          
M     6             1                    
N     16           1       1              
P     3                     2            
Q     3                                  
R     6               1                  
S     6       1                          
T     6                                  
V     12               1                  
Y     9                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Bangladesh 29558 A 633 633
1 Bangladesh 29559 T 633 633
2 Bangladesh 29560 G A 633 630 Met1?
3 Bangladesh 29561 G 633 633
4 Bangladesh 29562 G 633 633
5 Bangladesh 29563 C 633 633
6 Bangladesh 29564 T 633 633
7 Bangladesh 29565 A 633 633
8 Bangladesh 29566 T 633 633
9 Bangladesh 29567 A 633 633
10 Bangladesh 29568 T 633 633
11 Bangladesh 29569 A 633 633
12 Bangladesh 29570 A 633 633
13 Bangladesh 29571 A 633 633
14 Bangladesh 29572 C 633 633
15 Bangladesh 29573 G 633 632
16 Bangladesh 29574 T 633 632
17 Bangladesh 29575 T 633 632
18 Bangladesh 29576 T 633 632
19 Bangladesh 29577 T 633 632
20 Bangladesh 29578 C A 634 629 Phe7Leu
21 Bangladesh 29579 G 634 633
22 Bangladesh 29580 C 634 633
23 Bangladesh 29581 T 634 633
24 Bangladesh 29582 T 634 634
25 Bangladesh 29583 T 634 634
26 Bangladesh 29584 T 634 634
27 Bangladesh 29585 C 634 633
28 Bangladesh 29586 C 634 634
29 Bangladesh 29587 G A,T 634 630 Pro10Pro-p.Pro10Pro
30 Bangladesh 29588 T 634 634
31 Bangladesh 29589 T 634 634
32 Bangladesh 29590 T 634 634
33 Bangladesh 29591 A 634 634
34 Bangladesh 29592 C 634 634
35 Bangladesh 29593 G 634 634
36 Bangladesh 29594 A 634 634
37 Bangladesh 29595 T 634 634
38 Bangladesh 29596 A 634 634
39 Bangladesh 29597 T 634 634
40 Bangladesh 29598 A 634 634
41 Bangladesh 29599 T 634 634
42 Bangladesh 29600 A 634 634
43 Bangladesh 29601 G 634 634
44 Bangladesh 29602 T 634 634
45 Bangladesh 29603 C 634 634
46 Bangladesh 29604 T 634 634
47 Bangladesh 29605 A 634 634
48 Bangladesh 29606 C 634 633
49 Bangladesh 29607 T 634 632
50 Bangladesh 29608 C 634 632
51 Bangladesh 29609 T 634 632
52 Bangladesh 29610 T 634 632
53 Bangladesh 29611 G 634 633
54 Bangladesh 29612 T 634 633
55 Bangladesh 29613 G 634 633
56 Bangladesh 29614 C T 634 630 Cys19Cys
57 Bangladesh 29615 A 634 633
58 Bangladesh 29616 G 634 633
59 Bangladesh 29617 A 634 633
60 Bangladesh 29618 A 634 633
61 Bangladesh 29619 T 634 633
62 Bangladesh 29620 G 634 633
63 Bangladesh 29621 A C 634 632 Asn22His
64 Bangladesh 29622 A 634 633
65 Bangladesh 29623 T 634 633
66 Bangladesh 29624 T 634 633
67 Bangladesh 29625 C T 634 631 Ser23Phe
68 Bangladesh 29626 T 634 633
69 Bangladesh 29627 C 634 633
70 Bangladesh 29628 G T 634 632 Arg24Leu
71 Bangladesh 29629 T 634 633
72 Bangladesh 29630 A 634 633
73 Bangladesh 29631 A 634 633
74 Bangladesh 29632 C T 634 632 Asn25Asn
75 Bangladesh 29633 T 634 633
76 Bangladesh 29634 A 634 633
77 Bangladesh 29635 C 634 633
78 Bangladesh 29636 A 634 633
79 Bangladesh 29637 T 634 633
80 Bangladesh 29638 A 634 633
81 Bangladesh 29639 G 634 633
82 Bangladesh 29640 C 634 634
83 Bangladesh 29641 A 634 634
84 Bangladesh 29642 C 634 633
85 Bangladesh 29643 A 634 634
86 Bangladesh 29644 A 634 634
87 Bangladesh 29645 G T 634 633 Val30Leu
88 Bangladesh 29646 T 634 634
89 Bangladesh 29647 A 634 634
90 Bangladesh 29648 G 634 634
91 Bangladesh 29649 A 634 634
92 Bangladesh 29650 T 634 634
93 Bangladesh 29651 G 634 634
94 Bangladesh 29652 T 634 634
95 Bangladesh 29653 A 634 634
96 Bangladesh 29654 G 634 634
97 Bangladesh 29655 T 634 634
98 Bangladesh 29656 T 634 634
99 Bangladesh 29657 A 634 634
100 Bangladesh 29658 A 634 634
101 Bangladesh 29659 C 634 633
102 Bangladesh 29660 T 634 634
103 Bangladesh 29661 T C 634 630 Phe35Ser
104 Bangladesh 29662 T 634 634
105 Bangladesh 29663 A 634 634
106 Bangladesh 29664 A 634 634
107 Bangladesh 29665 T 634 634
108 Bangladesh 29666 C T 609 608 Leu37Phe
109 Bangladesh 29667 T 609 609
110 Bangladesh 29668 C 609 609
111 Bangladesh 29669 A 609 609
112 Bangladesh 29670 C 609 609
113 Bangladesh 29671 A 609 609
114 Bangladesh 29672 T 609 609
115 Bangladesh 29673 A 609 609
116 Bangladesh 29674 G 607 607