National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12       1                        
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12 1                              
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bahrain 29558 A 149 149
1 Bahrain 29559 T 149 149
2 Bahrain 29560 G 149 149
3 Bahrain 29561 G 149 149
4 Bahrain 29562 G 149 149
5 Bahrain 29563 C 149 149
6 Bahrain 29564 T 149 149
7 Bahrain 29565 A 149 149
8 Bahrain 29566 T 149 149
9 Bahrain 29567 A 149 149
10 Bahrain 29568 T 149 149
11 Bahrain 29569 A 149 149
12 Bahrain 29570 A 149 149
13 Bahrain 29571 A 149 149
14 Bahrain 29572 C 149 149
15 Bahrain 29573 G 149 149
16 Bahrain 29574 T 149 149
17 Bahrain 29575 T 149 149
18 Bahrain 29576 T 149 149
19 Bahrain 29577 T 149 149
20 Bahrain 29578 C 149 149
21 Bahrain 29579 G 149 149
22 Bahrain 29580 C 149 149
23 Bahrain 29581 T 149 149
24 Bahrain 29582 T 149 149
25 Bahrain 29583 T 149 149
26 Bahrain 29584 T 149 149
27 Bahrain 29585 C 149 149
28 Bahrain 29586 C 149 149
29 Bahrain 29587 G 149 149
30 Bahrain 29588 T 149 149
31 Bahrain 29589 T 149 149
32 Bahrain 29590 T 149 149
33 Bahrain 29591 A 149 149
34 Bahrain 29592 C 149 149
35 Bahrain 29593 G 149 149
36 Bahrain 29594 A 149 149
37 Bahrain 29595 T 149 149
38 Bahrain 29596 A 149 149
39 Bahrain 29597 T 149 149
40 Bahrain 29598 A 149 149
41 Bahrain 29599 T 149 149
42 Bahrain 29600 A 149 149
43 Bahrain 29601 G 149 149
44 Bahrain 29602 T 149 149
45 Bahrain 29603 C 149 149
46 Bahrain 29604 T 149 149
47 Bahrain 29605 A 149 149
48 Bahrain 29606 C 149 149
49 Bahrain 29607 T 149 149
50 Bahrain 29608 C 149 149
51 Bahrain 29609 T 149 149
52 Bahrain 29610 T 149 149
53 Bahrain 29611 G 149 149
54 Bahrain 29612 T 149 149
55 Bahrain 29613 G 149 149
56 Bahrain 29614 C 149 149
57 Bahrain 29615 A 149 149
58 Bahrain 29616 G 149 149
59 Bahrain 29617 A 149 149
60 Bahrain 29618 A 149 149
61 Bahrain 29619 T 149 149
62 Bahrain 29620 G 149 149
63 Bahrain 29621 A 149 149
64 Bahrain 29622 A 149 149
65 Bahrain 29623 T 149 149
66 Bahrain 29624 T 149 149
67 Bahrain 29625 C 149 149
68 Bahrain 29626 T 149 149
69 Bahrain 29627 C 149 149
70 Bahrain 29628 G 149 149
71 Bahrain 29629 T 149 149
72 Bahrain 29630 A 146 146
73 Bahrain 29631 A 146 146
74 Bahrain 29632 C 146 146
75 Bahrain 29633 T 146 146
76 Bahrain 29634 A 146 146
77 Bahrain 29635 C 146 146
78 Bahrain 29636 A 146 146
79 Bahrain 29637 T 146 146
80 Bahrain 29638 A 146 146
81 Bahrain 29639 G 146 146
82 Bahrain 29640 C 146 146
83 Bahrain 29641 A 146 146
84 Bahrain 29642 C 146 146
85 Bahrain 29643 A 146 146
86 Bahrain 29644 A 146 146
87 Bahrain 29645 G 146 146
88 Bahrain 29646 T C 146 143 Val30Ala
89 Bahrain 29647 A 146 146
90 Bahrain 29648 G 146 146
91 Bahrain 29649 A 146 146
92 Bahrain 29650 T 146 146
93 Bahrain 29651 G 146 146
94 Bahrain 29652 T 146 146
95 Bahrain 29653 A 146 146
96 Bahrain 29654 G 146 146
97 Bahrain 29655 T 146 146
98 Bahrain 29656 T 146 146
99 Bahrain 29657 A 146 146
100 Bahrain 29658 A 146 146
101 Bahrain 29659 C 146 146
102 Bahrain 29660 T 146 146
103 Bahrain 29661 T 146 146
104 Bahrain 29662 T 146 146
105 Bahrain 29663 A 146 146
106 Bahrain 29664 A 146 146
107 Bahrain 29665 T 146 146
108 Bahrain 29666 C T 146 145 Leu37Phe
109 Bahrain 29667 T 146 146
110 Bahrain 29668 C 146 146
111 Bahrain 29669 A 146 146
112 Bahrain 29670 C 146 146
113 Bahrain 29671 A 146 146
114 Bahrain 29672 T 146 146
115 Bahrain 29673 A 146 146
116 Bahrain 29674 G 146 146