National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I K L M N P Q R S T V Y
*     2                                  
-     117                                  
?                                        
A     6                                  
C     3   1                              
D     3                                  
F     12                                  
G     3                                  
I     9                               1  
K                                        
L     12                                  
M     6             1                    
N     16                                  
P     3                                  
Q     3                                  
R     6               1                  
S     6                                  
T     6           1                 1    
V     12               1                  
Y     9                                 1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Austria 29558 A 1342 1342
1 Austria 29559 T 1342 1342
2 Austria 29560 G 1342 1342
3 Austria 29561 G 1342 1342
4 Austria 29562 G 1342 1342
5 Austria 29563 C 1342 1342
6 Austria 29564 T 1342 1342
7 Austria 29565 A 1342 1342
8 Austria 29566 T 1342 1342
9 Austria 29567 A G 1342 1340 Ile4Val
10 Austria 29568 T 1342 1342
11 Austria 29569 A 1342 1342
12 Austria 29570 A 1342 1342
13 Austria 29571 A 1342 1342
14 Austria 29572 C 1342 1342
15 Austria 29573 G 1342 1342
16 Austria 29574 T 1342 1342
17 Austria 29575 T 1342 1342
18 Austria 29576 T 1342 1342
19 Austria 29577 T 1342 1342
20 Austria 29578 C 1342 1342
21 Austria 29579 G 1342 1342
22 Austria 29580 C 1342 1342
23 Austria 29581 T 1342 1342
24 Austria 29582 T 1342 1342
25 Austria 29583 T 1342 1342
26 Austria 29584 T 1342 1342
27 Austria 29585 C 1342 1342
28 Austria 29586 C 1342 1342
29 Austria 29587 G 1342 1342
30 Austria 29588 T 1342 1342
31 Austria 29589 T 1342 1342
32 Austria 29590 T 1342 1342
33 Austria 29591 A 1342 1342
34 Austria 29592 C 1342 1342
35 Austria 29593 G A 1342 1341 Thr12Thr
36 Austria 29594 A 1342 1342
37 Austria 29595 T 1342 1342
38 Austria 29596 A 1342 1342
39 Austria 29597 T 1342 1342
40 Austria 29598 A 1342 1342
41 Austria 29599 T 1342 1342
42 Austria 29600 A 1342 1342
43 Austria 29601 G 1342 1342
44 Austria 29602 T 1342 1342
45 Austria 29603 C 1342 1342
46 Austria 29604 T 1342 1342
47 Austria 29605 A 1342 1342
48 Austria 29606 C 1342 1342
49 Austria 29607 T 1342 1342
50 Austria 29608 C 1342 1342
51 Austria 29609 T 1342 1342
52 Austria 29610 T 1342 1342
53 Austria 29611 G 1342 1342
54 Austria 29612 T 1342 1342
55 Austria 29613 G 1342 1342
56 Austria 29614 C T 1342 1340 Cys19Cys
57 Austria 29615 A 1342 1342
58 Austria 29616 G 1342 1342
59 Austria 29617 A 1342 1342
60 Austria 29618 A 1342 1342
61 Austria 29619 T A 1342 1341 Met21Lys
62 Austria 29620 G 1342 1342
63 Austria 29621 A 1342 1342
64 Austria 29622 A 1342 1342
65 Austria 29623 T 1342 1342
66 Austria 29624 T 1342 1342
67 Austria 29625 C 1342 1342
68 Austria 29626 T 1342 1342
69 Austria 29627 C 1342 1342
70 Austria 29628 G T 1342 1339 Arg24Leu
71 Austria 29629 T 1342 1342
72 Austria 29630 A 1342 1342
73 Austria 29631 A 1342 1342
74 Austria 29632 C 1342 1342
75 Austria 29633 T 1342 1342
76 Austria 29634 A 1342 1342
77 Austria 29635 C T 1342 1341 Tyr26Tyr
78 Austria 29636 A 1342 1342
79 Austria 29637 T 1342 1342
80 Austria 29638 A 1342 1342
81 Austria 29639 G 1342 1342
82 Austria 29640 C 1342 1342
83 Austria 29641 A 1342 1342
84 Austria 29642 C 1342 1342
85 Austria 29643 A 1342 1342
86 Austria 29644 A 1342 1342
87 Austria 29645 G T 1342 1276 Val30Leu
88 Austria 29646 T 1342 1342
89 Austria 29647 A 1342 1342
90 Austria 29648 G 1342 1342
91 Austria 29649 A 1342 1342
92 Austria 29650 T 1342 1342
93 Austria 29651 G 1342 1342
94 Austria 29652 T 1342 1342
95 Austria 29653 A 1342 1342
96 Austria 29654 G 1342 1342
97 Austria 29655 T 1342 1342
98 Austria 29656 T 1342 1342
99 Austria 29657 A 1342 1342
100 Austria 29658 A 1342 1342
101 Austria 29659 C 1342 1342
102 Austria 29660 T 1342 1342
103 Austria 29661 T 1342 1342
104 Austria 29662 T 1342 1342
105 Austria 29663 A 1342 1342
106 Austria 29664 A 1342 1342
107 Austria 29665 T 1342 1342
108 Austria 29666 C 1315 1314
109 Austria 29667 T 1315 1315
110 Austria 29668 C 1315 1315
111 Austria 29669 A 1315 1315
112 Austria 29670 C T 1315 1313 Thr38Ile
113 Austria 29671 A 1315 1315
114 Austria 29672 T 1315 1315
115 Austria 29673 A 1315 1314
116 Austria 29674 G 1314 1314