National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Aruba 29558 A 11 11
1 Aruba 29559 T 11 11
2 Aruba 29560 G 11 11
3 Aruba 29561 G 11 11
4 Aruba 29562 G 11 11
5 Aruba 29563 C 11 11
6 Aruba 29564 T 11 11
7 Aruba 29565 A 11 11
8 Aruba 29566 T 11 11
9 Aruba 29567 A 11 11
10 Aruba 29568 T 11 11
11 Aruba 29569 A 11 11
12 Aruba 29570 A 11 11
13 Aruba 29571 A 11 11
14 Aruba 29572 C 11 11
15 Aruba 29573 G 11 11
16 Aruba 29574 T 11 11
17 Aruba 29575 T 11 11
18 Aruba 29576 T 11 11
19 Aruba 29577 T 11 11
20 Aruba 29578 C 11 11
21 Aruba 29579 G 11 11
22 Aruba 29580 C 11 11
23 Aruba 29581 T 11 11
24 Aruba 29582 T 11 11
25 Aruba 29583 T 11 11
26 Aruba 29584 T 11 11
27 Aruba 29585 C 11 11
28 Aruba 29586 C 11 11
29 Aruba 29587 G 11 11
30 Aruba 29588 T 11 11
31 Aruba 29589 T 11 11
32 Aruba 29590 T 11 11
33 Aruba 29591 A 11 11
34 Aruba 29592 C 11 11
35 Aruba 29593 G 11 11
36 Aruba 29594 A 11 11
37 Aruba 29595 T 11 11
38 Aruba 29596 A 11 11
39 Aruba 29597 T 11 11
40 Aruba 29598 A 11 11
41 Aruba 29599 T 11 11
42 Aruba 29600 A 11 11
43 Aruba 29601 G 11 11
44 Aruba 29602 T 11 11
45 Aruba 29603 C 11 11
46 Aruba 29604 T 11 11
47 Aruba 29605 A 11 11
48 Aruba 29606 C 11 11
49 Aruba 29607 T 11 11
50 Aruba 29608 C 11 11
51 Aruba 29609 T 11 11
52 Aruba 29610 T 11 11
53 Aruba 29611 G 11 11
54 Aruba 29612 T 11 11
55 Aruba 29613 G 11 11
56 Aruba 29614 C 11 11
57 Aruba 29615 A 11 11
58 Aruba 29616 G 11 11
59 Aruba 29617 A 11 11
60 Aruba 29618 A 11 11
61 Aruba 29619 T 11 11
62 Aruba 29620 G 11 11
63 Aruba 29621 A 11 11
64 Aruba 29622 A 11 11
65 Aruba 29623 T 11 11
66 Aruba 29624 T 11 11
67 Aruba 29625 C 11 11
68 Aruba 29626 T 11 11
69 Aruba 29627 C 11 11
70 Aruba 29628 G 11 11
71 Aruba 29629 T 11 11
72 Aruba 29630 A 11 11
73 Aruba 29631 A 11 11
74 Aruba 29632 C 11 11
75 Aruba 29633 T 11 11
76 Aruba 29634 A 11 11
77 Aruba 29635 C 11 11
78 Aruba 29636 A 11 11
79 Aruba 29637 T 11 11
80 Aruba 29638 A 11 11
81 Aruba 29639 G 11 11
82 Aruba 29640 C 11 11
83 Aruba 29641 A 11 11
84 Aruba 29642 C 11 11
85 Aruba 29643 A 11 11
86 Aruba 29644 A 11 11
87 Aruba 29645 G 11 11
88 Aruba 29646 T 11 11
89 Aruba 29647 A 11 11
90 Aruba 29648 G 11 11
91 Aruba 29649 A 11 11
92 Aruba 29650 T 11 11
93 Aruba 29651 G 11 11
94 Aruba 29652 T 11 11
95 Aruba 29653 A 11 11
96 Aruba 29654 G 11 11
97 Aruba 29655 T 11 11
98 Aruba 29656 T 11 11
99 Aruba 29657 A 11 11
100 Aruba 29658 A 11 11
101 Aruba 29659 C 11 11
102 Aruba 29660 T 11 11
103 Aruba 29661 T 11 11
104 Aruba 29662 T 11 11
105 Aruba 29663 A 11 11
106 Aruba 29664 A 11 11
107 Aruba 29665 T 11 11
108 Aruba 29666 C 11 11
109 Aruba 29667 T 11 11
110 Aruba 29668 C 11 11
111 Aruba 29669 A 11 11
112 Aruba 29670 C 11 11
113 Aruba 29671 A 11 11
114 Aruba 29672 T 11 11
115 Aruba 29673 A 11 11
116 Aruba 29674 G 11 11