National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Armenia 29558 A 3 3
1 Armenia 29559 T 3 3
2 Armenia 29560 G 3 3
3 Armenia 29561 G 3 3
4 Armenia 29562 G 3 3
5 Armenia 29563 C 3 3
6 Armenia 29564 T 3 3
7 Armenia 29565 A 3 3
8 Armenia 29566 T 3 3
9 Armenia 29567 A 3 3
10 Armenia 29568 T 3 3
11 Armenia 29569 A 3 3
12 Armenia 29570 A 3 3
13 Armenia 29571 A 3 3
14 Armenia 29572 C 3 3
15 Armenia 29573 G 3 3
16 Armenia 29574 T 3 3
17 Armenia 29575 T 3 3
18 Armenia 29576 T 3 3
19 Armenia 29577 T 3 3
20 Armenia 29578 C 3 3
21 Armenia 29579 G 3 3
22 Armenia 29580 C 3 3
23 Armenia 29581 T 3 3
24 Armenia 29582 T 3 3
25 Armenia 29583 T 3 3
26 Armenia 29584 T 3 3
27 Armenia 29585 C 3 3
28 Armenia 29586 C 3 3
29 Armenia 29587 G 3 3
30 Armenia 29588 T 3 3
31 Armenia 29589 T 3 3
32 Armenia 29590 T 3 3
33 Armenia 29591 A 3 3
34 Armenia 29592 C 3 3
35 Armenia 29593 G 3 3
36 Armenia 29594 A 3 3
37 Armenia 29595 T 3 3
38 Armenia 29596 A 3 3
39 Armenia 29597 T 3 3
40 Armenia 29598 A 3 3
41 Armenia 29599 T 3 3
42 Armenia 29600 A 3 3
43 Armenia 29601 G 3 3
44 Armenia 29602 T 3 3
45 Armenia 29603 C 3 3
46 Armenia 29604 T 3 3
47 Armenia 29605 A 3 3
48 Armenia 29606 C 3 3
49 Armenia 29607 T 3 3
50 Armenia 29608 C 3 3
51 Armenia 29609 T 3 3
52 Armenia 29610 T 3 3
53 Armenia 29611 G 3 3
54 Armenia 29612 T 3 3
55 Armenia 29613 G 3 3
56 Armenia 29614 C 3 3
57 Armenia 29615 A 3 3
58 Armenia 29616 G 3 3
59 Armenia 29617 A 3 3
60 Armenia 29618 A 3 3
61 Armenia 29619 T 3 3
62 Armenia 29620 G 3 3
63 Armenia 29621 A 3 3
64 Armenia 29622 A 3 3
65 Armenia 29623 T 3 3
66 Armenia 29624 T 3 3
67 Armenia 29625 C 3 3
68 Armenia 29626 T 3 3
69 Armenia 29627 C 3 3
70 Armenia 29628 G 3 3
71 Armenia 29629 T 3 3
72 Armenia 29630 A 3 3
73 Armenia 29631 A 3 3
74 Armenia 29632 C 3 3
75 Armenia 29633 T 3 3
76 Armenia 29634 A 3 3
77 Armenia 29635 C 3 3
78 Armenia 29636 A 3 3
79 Armenia 29637 T 3 3
80 Armenia 29638 A 3 3
81 Armenia 29639 G 3 3
82 Armenia 29640 C 3 3
83 Armenia 29641 A 3 3
84 Armenia 29642 C 3 3
85 Armenia 29643 A 3 3
86 Armenia 29644 A 3 3
87 Armenia 29645 G 3 3
88 Armenia 29646 T 3 3
89 Armenia 29647 A 3 3
90 Armenia 29648 G 3 3
91 Armenia 29649 A 3 3
92 Armenia 29650 T 3 3
93 Armenia 29651 G 3 3
94 Armenia 29652 T 3 3
95 Armenia 29653 A 3 3
96 Armenia 29654 G 3 3
97 Armenia 29655 T 3 3
98 Armenia 29656 T 3 3
99 Armenia 29657 A 3 3
100 Armenia 29658 A 3 3
101 Armenia 29659 C 3 3
102 Armenia 29660 T 3 3
103 Armenia 29661 T 3 3
104 Armenia 29662 T 3 3
105 Armenia 29663 A 3 3
106 Armenia 29664 A 3 3
107 Armenia 29665 T 3 3
108 Armenia 29666 C 3 3
109 Armenia 29667 T 3 3
110 Armenia 29668 C 3 3
111 Armenia 29669 A 3 3
112 Armenia 29670 C 3 3
113 Armenia 29671 A 3 3
114 Armenia 29672 T 3 3
115 Armenia 29673 A 3 3
116 Armenia 29674 G 3 3