National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3   1                            
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                 1              
P     3                         1      
Q 1   3                                
R     6                                
S     6                         1      
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Argentina 29558 A 660 660
1 Argentina 29559 T 660 660
2 Argentina 29560 G 660 660
3 Argentina 29561 G 660 660
4 Argentina 29562 G 660 660
5 Argentina 29563 C 660 660
6 Argentina 29564 T 660 660
7 Argentina 29565 A 660 660
8 Argentina 29566 T 660 660
9 Argentina 29567 A 660 660
10 Argentina 29568 T 660 660
11 Argentina 29569 A 660 660
12 Argentina 29570 A 660 660
13 Argentina 29571 A 660 660
14 Argentina 29572 C 660 660
15 Argentina 29573 G 660 660
16 Argentina 29574 T 660 660
17 Argentina 29575 T 660 660
18 Argentina 29576 T 660 660
19 Argentina 29577 T 660 660
20 Argentina 29578 C 660 660
21 Argentina 29579 G 660 660
22 Argentina 29580 C 660 660
23 Argentina 29581 T 660 660
24 Argentina 29582 T 660 660
25 Argentina 29583 T 660 660
26 Argentina 29584 T 660 660
27 Argentina 29585 C T 660 657 Pro10Ser
28 Argentina 29586 C 660 660
29 Argentina 29587 G 660 660
30 Argentina 29588 T 660 660
31 Argentina 29589 T 660 660
32 Argentina 29590 T 660 660
33 Argentina 29591 A 660 660
34 Argentina 29592 C 660 660
35 Argentina 29593 G 660 660
36 Argentina 29594 A 660 660
37 Argentina 29595 T 660 660
38 Argentina 29596 A 660 660
39 Argentina 29597 T 660 660
40 Argentina 29598 A 660 660
41 Argentina 29599 T 660 660
42 Argentina 29600 A 660 660
43 Argentina 29601 G 660 660
44 Argentina 29602 T 660 660
45 Argentina 29603 C 660 660
46 Argentina 29604 T 660 660
47 Argentina 29605 A 660 660
48 Argentina 29606 C 660 660
49 Argentina 29607 T 660 660
50 Argentina 29608 C 660 660
51 Argentina 29609 T 660 660
52 Argentina 29610 T 660 660
53 Argentina 29611 G 660 660
54 Argentina 29612 T 660 660
55 Argentina 29613 G 660 660
56 Argentina 29614 C T 660 656 Cys19Cys
57 Argentina 29615 A 660 660
58 Argentina 29616 G 660 660
59 Argentina 29617 A 660 660
60 Argentina 29618 A 660 660
61 Argentina 29619 T 660 660
62 Argentina 29620 G 660 660
63 Argentina 29621 A 660 660
64 Argentina 29622 A 660 660
65 Argentina 29623 T 660 660
66 Argentina 29624 T 660 660
67 Argentina 29625 C 660 660
68 Argentina 29626 T C 660 658 Ser23Ser
69 Argentina 29627 C 660 660
70 Argentina 29628 G 660 660
71 Argentina 29629 T 660 660
72 Argentina 29630 A 660 660
73 Argentina 29631 A 660 660
74 Argentina 29632 C T 660 659 Asn25Asn
75 Argentina 29633 T 660 660
76 Argentina 29634 A 660 660
77 Argentina 29635 C 660 660
78 Argentina 29636 A 660 660
79 Argentina 29637 T 660 660
80 Argentina 29638 A 660 660
81 Argentina 29639 G 660 660
82 Argentina 29640 C 660 660
83 Argentina 29641 A 660 660
84 Argentina 29642 C T 660 659 Gln29*
85 Argentina 29643 A 660 660
86 Argentina 29644 A 660 660
87 Argentina 29645 G T 660 659 Val30Leu
88 Argentina 29646 T 660 660
89 Argentina 29647 A 660 660
90 Argentina 29648 G 660 660
91 Argentina 29649 A 660 659
92 Argentina 29650 T 660 659
93 Argentina 29651 G 659 658
94 Argentina 29652 T 659 658
95 Argentina 29653 A 659 658
96 Argentina 29654 G 659 659
97 Argentina 29655 T 659 659
98 Argentina 29656 T 659 659
99 Argentina 29657 A 659 659
100 Argentina 29658 A 659 659
101 Argentina 29659 C 659 659
102 Argentina 29660 T 659 659
103 Argentina 29661 T 659 659
104 Argentina 29662 T 659 659
105 Argentina 29663 A 659 659
106 Argentina 29664 A 659 659
107 Argentina 29665 T 659 659
108 Argentina 29666 C 655 655
109 Argentina 29667 T 651 651
110 Argentina 29668 C 651 651
111 Argentina 29669 A 651 651
112 Argentina 29670 C 651 651
113 Argentina 29671 A 651 651
114 Argentina 29672 T 651 651
115 Argentina 29673 A 651 651
116 Argentina 29674 G 651 651