National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Andorra 29558 A 1 1
1 Andorra 29559 T 1 1
2 Andorra 29560 G 1 1
3 Andorra 29561 G 1 1
4 Andorra 29562 G 1 1
5 Andorra 29563 C 1 1
6 Andorra 29564 T 1 1
7 Andorra 29565 A 1 1
8 Andorra 29566 T 1 1
9 Andorra 29567 A 1 1
10 Andorra 29568 T 1 1
11 Andorra 29569 A 1 1
12 Andorra 29570 A 1 1
13 Andorra 29571 A 1 1
14 Andorra 29572 C 1 1
15 Andorra 29573 G 1 1
16 Andorra 29574 T 1 1
17 Andorra 29575 T 1 1
18 Andorra 29576 T 1 1
19 Andorra 29577 T 1 1
20 Andorra 29578 C 1 1
21 Andorra 29579 G 1 1
22 Andorra 29580 C 1 1
23 Andorra 29581 T 1 1
24 Andorra 29582 T 1 1
25 Andorra 29583 T 1 1
26 Andorra 29584 T 1 1
27 Andorra 29585 C 1 1
28 Andorra 29586 C 1 1
29 Andorra 29587 G 1 1
30 Andorra 29588 T 1 1
31 Andorra 29589 T 1 1
32 Andorra 29590 T 1 1
33 Andorra 29591 A 1 1
34 Andorra 29592 C 1 1
35 Andorra 29593 G 1 1
36 Andorra 29594 A 1 1
37 Andorra 29595 T 1 1
38 Andorra 29596 A 1 1
39 Andorra 29597 T 1 1
40 Andorra 29598 A 1 1
41 Andorra 29599 T 1 1
42 Andorra 29600 A 1 1
43 Andorra 29601 G 1 1
44 Andorra 29602 T 1 1
45 Andorra 29603 C 1 1
46 Andorra 29604 T 1 1
47 Andorra 29605 A 1 1
48 Andorra 29606 C 1 1
49 Andorra 29607 T 1 1
50 Andorra 29608 C 1 1
51 Andorra 29609 T 1 1
52 Andorra 29610 T 1 1
53 Andorra 29611 G 1 1
54 Andorra 29612 T 1 1
55 Andorra 29613 G 1 1
56 Andorra 29614 C 1 1
57 Andorra 29615 A 1 1
58 Andorra 29616 G 1 1
59 Andorra 29617 A 1 1
60 Andorra 29618 A 1 1
61 Andorra 29619 T 1 1
62 Andorra 29620 G 1 1
63 Andorra 29621 A 1 1
64 Andorra 29622 A 1 1
65 Andorra 29623 T 1 1
66 Andorra 29624 T 1 1
67 Andorra 29625 C 1 1
68 Andorra 29626 T 1 1
69 Andorra 29627 C 1 1
70 Andorra 29628 G 1 1
71 Andorra 29629 T 1 1
72 Andorra 29630 A 1 1
73 Andorra 29631 A 1 1
74 Andorra 29632 C 1 1
75 Andorra 29633 T 1 1
76 Andorra 29634 A 1 1
77 Andorra 29635 C 1 1
78 Andorra 29636 A 1 1
79 Andorra 29637 T 1 1
80 Andorra 29638 A 1 1
81 Andorra 29639 G 1 1
82 Andorra 29640 C 1 1
83 Andorra 29641 A 1 1
84 Andorra 29642 C 1 1
85 Andorra 29643 A 1 1
86 Andorra 29644 A 1 1
87 Andorra 29645 G 1 1
88 Andorra 29646 T 1 1
89 Andorra 29647 A 1 1
90 Andorra 29648 G 1 1
91 Andorra 29649 A 1 1
92 Andorra 29650 T 1 1
93 Andorra 29651 G 1 1
94 Andorra 29652 T 1 1
95 Andorra 29653 A 1 1
96 Andorra 29654 G 1 1
97 Andorra 29655 T 1 1
98 Andorra 29656 T 1 1
99 Andorra 29657 A 1 1
100 Andorra 29658 A 1 1
101 Andorra 29659 C 1 1
102 Andorra 29660 T 1 1
103 Andorra 29661 T 1 1
104 Andorra 29662 T 1 1
105 Andorra 29663 A 1 1
106 Andorra 29664 A 1 1
107 Andorra 29665 T 1 1
108 Andorra 29666 C 1 1
109 Andorra 29667 T 1 1
110 Andorra 29668 C 1 1
111 Andorra 29669 A 1 1
112 Andorra 29670 C 1 1
113 Andorra 29671 A 1 1
114 Andorra 29672 T 1 1
115 Andorra 29673 A 1 1
116 Andorra 29674 G 1 1