National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Algeria 29558 A 18 18
1 Algeria 29559 T 18 18
2 Algeria 29560 G 18 18
3 Algeria 29561 G 18 18
4 Algeria 29562 G 18 18
5 Algeria 29563 C 18 18
6 Algeria 29564 T 18 18
7 Algeria 29565 A 18 18
8 Algeria 29566 T 18 18
9 Algeria 29567 A 18 18
10 Algeria 29568 T 18 18
11 Algeria 29569 A 18 18
12 Algeria 29570 A 18 18
13 Algeria 29571 A 18 18
14 Algeria 29572 C 18 18
15 Algeria 29573 G 18 18
16 Algeria 29574 T 18 18
17 Algeria 29575 T 18 18
18 Algeria 29576 T 18 18
19 Algeria 29577 T 18 18
20 Algeria 29578 C 18 18
21 Algeria 29579 G 18 18
22 Algeria 29580 C 18 18
23 Algeria 29581 T 18 18
24 Algeria 29582 T 18 18
25 Algeria 29583 T 18 18
26 Algeria 29584 T 18 18
27 Algeria 29585 C 18 18
28 Algeria 29586 C 18 18
29 Algeria 29587 G 18 18
30 Algeria 29588 T 18 18
31 Algeria 29589 T 18 18
32 Algeria 29590 T 18 18
33 Algeria 29591 A 18 18
34 Algeria 29592 C 18 18
35 Algeria 29593 G 18 18
36 Algeria 29594 A 18 18
37 Algeria 29595 T 18 18
38 Algeria 29596 A 18 18
39 Algeria 29597 T 18 18
40 Algeria 29598 A 18 18
41 Algeria 29599 T 18 18
42 Algeria 29600 A 18 18
43 Algeria 29601 G 18 18
44 Algeria 29602 T 18 18
45 Algeria 29603 C 18 18
46 Algeria 29604 T 18 18
47 Algeria 29605 A 18 18
48 Algeria 29606 C 18 18
49 Algeria 29607 T 18 18
50 Algeria 29608 C 18 18
51 Algeria 29609 T 18 18
52 Algeria 29610 T 18 18
53 Algeria 29611 G 18 18
54 Algeria 29612 T 18 18
55 Algeria 29613 G 18 18
56 Algeria 29614 C 18 18
57 Algeria 29615 A 18 18
58 Algeria 29616 G 18 18
59 Algeria 29617 A 18 18
60 Algeria 29618 A 18 18
61 Algeria 29619 T 18 18
62 Algeria 29620 G 18 18
63 Algeria 29621 A 18 18
64 Algeria 29622 A 18 18
65 Algeria 29623 T 18 18
66 Algeria 29624 T 18 18
67 Algeria 29625 C 18 18
68 Algeria 29626 T 18 18
69 Algeria 29627 C 18 18
70 Algeria 29628 G 18 18
71 Algeria 29629 T 18 18
72 Algeria 29630 A 18 18
73 Algeria 29631 A 18 18
74 Algeria 29632 C 18 18
75 Algeria 29633 T 18 18
76 Algeria 29634 A 18 18
77 Algeria 29635 C 18 18
78 Algeria 29636 A 18 18
79 Algeria 29637 T 18 18
80 Algeria 29638 A 18 18
81 Algeria 29639 G 18 18
82 Algeria 29640 C 18 18
83 Algeria 29641 A 18 18
84 Algeria 29642 C 18 18
85 Algeria 29643 A 18 18
86 Algeria 29644 A 18 18
87 Algeria 29645 G 18 18
88 Algeria 29646 T 18 18
89 Algeria 29647 A 18 18
90 Algeria 29648 G 18 18
91 Algeria 29649 A 18 18
92 Algeria 29650 T 18 18
93 Algeria 29651 G 18 18
94 Algeria 29652 T 18 18
95 Algeria 29653 A 18 18
96 Algeria 29654 G 18 18
97 Algeria 29655 T 18 18
98 Algeria 29656 T 18 18
99 Algeria 29657 A 18 18
100 Algeria 29658 A 18 18
101 Algeria 29659 C 18 18
102 Algeria 29660 T 18 18
103 Algeria 29661 T 18 18
104 Algeria 29662 T 18 18
105 Algeria 29663 A 18 18
106 Algeria 29664 A 18 18
107 Algeria 29665 T 18 18
108 Algeria 29666 C 18 18
109 Algeria 29667 T 18 18
110 Algeria 29668 C 18 18
111 Algeria 29669 A 18 18
112 Algeria 29670 C 18 18
113 Algeria 29671 A 18 18
114 Algeria 29672 T 18 18
115 Algeria 29673 A 18 18
116 Algeria 29674 G 18 18