National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Albania 29558 A 1 1
1 Albania 29559 T 1 1
2 Albania 29560 G 1 1
3 Albania 29561 G 1 1
4 Albania 29562 G 1 1
5 Albania 29563 C 1 1
6 Albania 29564 T 1 1
7 Albania 29565 A 1 1
8 Albania 29566 T 1 1
9 Albania 29567 A 1 1
10 Albania 29568 T 1 1
11 Albania 29569 A 1 1
12 Albania 29570 A 1 1
13 Albania 29571 A 1 1
14 Albania 29572 C 1 1
15 Albania 29573 G 1 1
16 Albania 29574 T 1 1
17 Albania 29575 T 1 1
18 Albania 29576 T 1 1
19 Albania 29577 T 1 1
20 Albania 29578 C 1 1
21 Albania 29579 G 1 1
22 Albania 29580 C 1 1
23 Albania 29581 T 1 1
24 Albania 29582 T 1 1
25 Albania 29583 T 1 1
26 Albania 29584 T 1 1
27 Albania 29585 C 1 1
28 Albania 29586 C 1 1
29 Albania 29587 G 1 1
30 Albania 29588 T 1 1
31 Albania 29589 T 1 1
32 Albania 29590 T 1 1
33 Albania 29591 A 1 1
34 Albania 29592 C 1 1
35 Albania 29593 G 1 1
36 Albania 29594 A 1 1
37 Albania 29595 T 1 1
38 Albania 29596 A 1 1
39 Albania 29597 T 1 1
40 Albania 29598 A 1 1
41 Albania 29599 T 1 1
42 Albania 29600 A 1 1
43 Albania 29601 G 1 1
44 Albania 29602 T 1 1
45 Albania 29603 C 1 1
46 Albania 29604 T 1 1
47 Albania 29605 A 1 1
48 Albania 29606 C 1 1
49 Albania 29607 T 1 1
50 Albania 29608 C 1 1
51 Albania 29609 T 1 1
52 Albania 29610 T 1 1
53 Albania 29611 G 1 1
54 Albania 29612 T 1 1
55 Albania 29613 G 1 1
56 Albania 29614 C 1 1
57 Albania 29615 A 1 1
58 Albania 29616 G 1 1
59 Albania 29617 A 1 1
60 Albania 29618 A 1 1
61 Albania 29619 T 1 1
62 Albania 29620 G 1 1
63 Albania 29621 A 1 1
64 Albania 29622 A 1 1
65 Albania 29623 T 1 1
66 Albania 29624 T 1 1
67 Albania 29625 C 1 1
68 Albania 29626 T 1 1
69 Albania 29627 C 1 1
70 Albania 29628 G 1 1
71 Albania 29629 T 1 1
72 Albania 29630 A 1 1
73 Albania 29631 A 1 1
74 Albania 29632 C 1 1
75 Albania 29633 T 1 1
76 Albania 29634 A 1 1
77 Albania 29635 C 1 1
78 Albania 29636 A 1 1
79 Albania 29637 T 1 1
80 Albania 29638 A 1 1
81 Albania 29639 G 1 1
82 Albania 29640 C 1 1
83 Albania 29641 A 1 1
84 Albania 29642 C 1 1
85 Albania 29643 A 1 1
86 Albania 29644 A 1 1
87 Albania 29645 G 1 1
88 Albania 29646 T 1 1
89 Albania 29647 A 1 1
90 Albania 29648 G 1 1
91 Albania 29649 A 1 1
92 Albania 29650 T 1 1
93 Albania 29651 G 1 1
94 Albania 29652 T 1 1
95 Albania 29653 A 1 1
96 Albania 29654 G 1 1
97 Albania 29655 T 1 1
98 Albania 29656 T 1 1
99 Albania 29657 A 1 1
100 Albania 29658 A 1 1
101 Albania 29659 C 1 1
102 Albania 29660 T 1 1
103 Albania 29661 T 1 1
104 Albania 29662 T 1 1
105 Albania 29663 A 1 1
106 Albania 29664 A 1 1
107 Albania 29665 T 1 1
108 Albania 29666 C 1 1
109 Albania 29667 T 1 1
110 Albania 29668 C 1 1
111 Albania 29669 A 1 1
112 Albania 29670 C 1 1
113 Albania 29671 A 1 1
114 Albania 29672 T 1 1
115 Albania 29673 A 1 1
116 Albania 29674 G 1 1