National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Zambia 12686 A 2 2
1 Zambia 12687 A 2 2
2 Zambia 12688 T 2 2
3 Zambia 12689 A 2 2
4 Zambia 12690 A 2 2
5 Zambia 12691 T 2 2
6 Zambia 12692 G 2 2
7 Zambia 12693 A 2 2
8 Zambia 12694 G 2 2
9 Zambia 12695 C 2 2
10 Zambia 12696 T 2 2
11 Zambia 12697 T 2 2
12 Zambia 12698 A 2 2
13 Zambia 12699 G 2 2
14 Zambia 12700 T 2 2
15 Zambia 12701 C 2 2
16 Zambia 12702 C 2 2
17 Zambia 12703 T 2 2
18 Zambia 12704 G 2 2
19 Zambia 12705 T 2 2
20 Zambia 12706 T 2 2
21 Zambia 12707 G 2 2
22 Zambia 12708 C 2 2
23 Zambia 12709 A 2 2
24 Zambia 12710 C 2 2
25 Zambia 12711 T 2 2
26 Zambia 12712 A 2 2
27 Zambia 12713 C 2 2
28 Zambia 12714 G 2 2
29 Zambia 12715 A 2 2
30 Zambia 12716 C 2 2
31 Zambia 12717 A 2 2
32 Zambia 12718 G 2 2
33 Zambia 12719 A 2 2
34 Zambia 12720 T 2 2
35 Zambia 12721 G 2 2
36 Zambia 12722 T 2 2
37 Zambia 12723 C 2 2
38 Zambia 12724 T 2 2
39 Zambia 12725 T 2 2
40 Zambia 12726 G 2 2
41 Zambia 12727 T 2 2
42 Zambia 12728 G 2 2
43 Zambia 12729 C 2 2
44 Zambia 12730 T 2 2
45 Zambia 12731 G 2 2
46 Zambia 12732 C 2 2
47 Zambia 12733 C 2 2
48 Zambia 12734 G 2 2
49 Zambia 12735 G 2 2
50 Zambia 12736 T 2 2
51 Zambia 12737 A 2 2
52 Zambia 12738 C 2 2
53 Zambia 12739 T 2 2
54 Zambia 12740 A 2 2
55 Zambia 12741 C 2 2
56 Zambia 12742 A 2 2
57 Zambia 12743 C 2 2
58 Zambia 12744 A 2 2
59 Zambia 12745 A 2 2
60 Zambia 12746 A 2 2
61 Zambia 12747 C 2 2
62 Zambia 12748 T 2 2
63 Zambia 12749 G 2 2
64 Zambia 12750 C 2 2
65 Zambia 12751 T 2 2
66 Zambia 12752 T 2 2
67 Zambia 12753 G 2 2
68 Zambia 12754 C 2 2
69 Zambia 12755 A 2 2
70 Zambia 12756 C 2 2
71 Zambia 12757 T 2 2
72 Zambia 12758 G 2 2
73 Zambia 12759 A 2 2
74 Zambia 12760 T 2 2
75 Zambia 12761 G 2 2
76 Zambia 12762 A 2 2
77 Zambia 12763 C 2 2
78 Zambia 12764 A 2 2
79 Zambia 12765 A 2 2
80 Zambia 12766 T 2 2
81 Zambia 12767 G 2 2
82 Zambia 12768 C 2 2
83 Zambia 12769 G 2 2
84 Zambia 12770 T 2 2
85 Zambia 12771 T 2 2
86 Zambia 12772 A 2 2
87 Zambia 12773 G 2 2
88 Zambia 12774 C 2 2
89 Zambia 12775 T 2 2
90 Zambia 12776 T 2 2
91 Zambia 12777 A 2 2
92 Zambia 12778 C 2 2
93 Zambia 12779 T 2 2
94 Zambia 12780 A 2 2
95 Zambia 12781 C 2 2
96 Zambia 12782 A 2 2
97 Zambia 12783 A 2 2
98 Zambia 12784 C 2 2
99 Zambia 12785 A 2 2
100 Zambia 12786 C 2 2
101 Zambia 12787 A 2 2
102 Zambia 12788 A 2 2
103 Zambia 12789 C 2 2
104 Zambia 12790 A 2 2
105 Zambia 12791 A 2 2
106 Zambia 12792 A 2 2
107 Zambia 12793 G 2 2
108 Zambia 12794 G 2 2
109 Zambia 12795 G 2 2
110 Zambia 12796 A 2 2
111 Zambia 12797 G 2 2
112 Zambia 12798 G 2 2
113 Zambia 12799 T 2 2
114 Zambia 12800 A 2 2
115 Zambia 12801 G 2 2
116 Zambia 12802 G 2 2
117 Zambia 12803 T 2 2
118 Zambia 12804 T 2 2
119 Zambia 12805 T 2 2
120 Zambia 12806 G 2 2
121 Zambia 12807 T 2 2
122 Zambia 12808 A 2 2
123 Zambia 12809 C 2 2
124 Zambia 12810 T 2 2
125 Zambia 12811 T 2 2
126 Zambia 12812 G 2 2
127 Zambia 12813 C 2 2
128 Zambia 12814 A 2 2
129 Zambia 12815 C 2 2
130 Zambia 12816 T 2 2
131 Zambia 12817 G 2 2
132 Zambia 12818 T 2 2
133 Zambia 12819 T 2 2
134 Zambia 12820 A 2 2
135 Zambia 12821 T 2 2
136 Zambia 12822 C 2 2
137 Zambia 12823 C 2 2
138 Zambia 12824 G 2 2
139 Zambia 12825 A 2 2
140 Zambia 12826 T 2 2
141 Zambia 12827 T 2 2
142 Zambia 12828 T 2 2
143 Zambia 12829 A 2 2
144 Zambia 12830 C 2 2
145 Zambia 12831 A 2 2
146 Zambia 12832 G 2 2
147 Zambia 12833 G 2 2
148 Zambia 12834 A 2 2
149 Zambia 12835 T 2 2
150 Zambia 12836 T 2 2
151 Zambia 12837 T 2 2
152 Zambia 12838 G 2 2
153 Zambia 12839 A 2 2
154 Zambia 12840 A 2 2
155 Zambia 12841 A 2 2
156 Zambia 12842 T 2 2
157 Zambia 12843 G 2 2
158 Zambia 12844 G 2 2
159 Zambia 12845 G 2 2
160 Zambia 12846 C 2 2
161 Zambia 12847 T 2 2
162 Zambia 12848 A 2 2
163 Zambia 12849 G 2 2
164 Zambia 12850 A 2 2
165 Zambia 12851 T 2 2
166 Zambia 12852 T 2 2
167 Zambia 12853 C 2 2
168 Zambia 12854 C 2 2
169 Zambia 12855 C 2 2
170 Zambia 12856 T 2 2
171 Zambia 12857 A 2 2
172 Zambia 12858 A 2 2
173 Zambia 12859 G 2 2
174 Zambia 12860 A 2 2
175 Zambia 12861 G 2 2
176 Zambia 12862 T 2 2
177 Zambia 12863 G 2 2
178 Zambia 12864 A 2 2
179 Zambia 12865 T 2 2
180 Zambia 12866 G 2 2
181 Zambia 12867 G 2 2
182 Zambia 12868 A 2 2
183 Zambia 12869 A 2 2
184 Zambia 12870 C 2 2
185 Zambia 12871 T 2 2
186 Zambia 12872 G 2 2
187 Zambia 12873 G 2 2
188 Zambia 12874 T 2 2
189 Zambia 12875 A 2 2
190 Zambia 12876 C 2 2
191 Zambia 12877 T 2 2
192 Zambia 12878 A 2 2
193 Zambia 12879 T 2 2
194 Zambia 12880 C 2 2
195 Zambia 12881 T 2 2
196 Zambia 12882 A 2 2
197 Zambia 12883 T 2 2
198 Zambia 12884 A 2 2
199 Zambia 12885 C 2 2
200 Zambia 12886 A 2 2
201 Zambia 12887 G 2 2
202 Zambia 12888 A 2 2
203 Zambia 12889 A 2 2
204 Zambia 12890 C 2 2
205 Zambia 12891 T 2 2
206 Zambia 12892 G 2 2
207 Zambia 12893 G 2 2
208 Zambia 12894 A 2 2
209 Zambia 12895 A 2 2
210 Zambia 12896 C 2 2
211 Zambia 12897 C 2 2
212 Zambia 12898 A 2 2
213 Zambia 12899 C 2 2
214 Zambia 12900 C 2 2
215 Zambia 12901 T 2 2
216 Zambia 12902 T 2 2
217 Zambia 12903 G 2 2
218 Zambia 12904 T 2 2
219 Zambia 12905 A 2 2
220 Zambia 12906 G 2 2
221 Zambia 12907 G 2 2
222 Zambia 12908 T 2 2
223 Zambia 12909 T 2 2
224 Zambia 12910 T 2 2
225 Zambia 12911 G 2 2
226 Zambia 12912 T 2 2
227 Zambia 12913 T 2 2
228 Zambia 12914 A 2 2
229 Zambia 12915 C 2 2
230 Zambia 12916 A 2 2
231 Zambia 12917 G 2 2
232 Zambia 12918 A 2 2
233 Zambia 12919 C 2 2
234 Zambia 12920 A 2 2
235 Zambia 12921 C 2 2
236 Zambia 12922 A 2 2
237 Zambia 12923 C 2 2
238 Zambia 12924 C 2 2
239 Zambia 12925 T 2 2
240 Zambia 12926 A 2 2
241 Zambia 12927 A 2 2
242 Zambia 12928 A 2 2
243 Zambia 12929 G 2 2
244 Zambia 12930 G 2 2
245 Zambia 12931 T 2 2
246 Zambia 12932 C 2 2
247 Zambia 12933 C 2 2
248 Zambia 12934 T 2 2
249 Zambia 12935 A 2 2
250 Zambia 12936 A 2 2
251 Zambia 12937 A 2 2
252 Zambia 12938 G 2 2
253 Zambia 12939 T 2 2
254 Zambia 12940 G 2 2
255 Zambia 12941 A 2 2
256 Zambia 12942 A 2 2
257 Zambia 12943 G 2 2
258 Zambia 12944 T 2 2
259 Zambia 12945 A 2 2
260 Zambia 12946 T 2 2
261 Zambia 12947 T 2 2
262 Zambia 12948 T 2 2
263 Zambia 12949 A 2 2
264 Zambia 12950 T 2 2
265 Zambia 12951 A 2 2
266 Zambia 12952 C 2 2
267 Zambia 12953 T 2 2
268 Zambia 12954 T 2 2
269 Zambia 12955 T 2 2
270 Zambia 12956 A 2 2
271 Zambia 12957 T 2 2
272 Zambia 12958 T 2 2
273 Zambia 12959 A 2 2
274 Zambia 12960 A 2 2
275 Zambia 12961 A 2 2
276 Zambia 12962 G 2 2
277 Zambia 12963 G 2 2
278 Zambia 12964 A 2 2
279 Zambia 12965 T 2 2
280 Zambia 12966 T 2 2
281 Zambia 12967 A 2 2
282 Zambia 12968 A 2 2
283 Zambia 12969 A 2 2
284 Zambia 12970 C 2 2
285 Zambia 12971 A 2 2
286 Zambia 12972 A 2 2
287 Zambia 12973 C 2 2
288 Zambia 12974 C 2 2
289 Zambia 12975 T 2 2
290 Zambia 12976 A 2 2
291 Zambia 12977 A 2 2
292 Zambia 12978 A 2 2
293 Zambia 12979 T 2 2
294 Zambia 12980 A 2 2
295 Zambia 12981 G 2 2
296 Zambia 12982 A 2 2
297 Zambia 12983 G 2 2
298 Zambia 12984 G 2 2
299 Zambia 12985 T 2 2
300 Zambia 12986 A 2 2
301 Zambia 12987 T 2 2
302 Zambia 12988 G 2 2
303 Zambia 12989 G 2 2
304 Zambia 12990 T 2 2
305 Zambia 12991 A 2 2
306 Zambia 12992 C 2 2
307 Zambia 12993 T 2 2
308 Zambia 12994 T 2 2
309 Zambia 12995 G 2 2
310 Zambia 12996 G 2 2
311 Zambia 12997 T 2 2
312 Zambia 12998 A 2 2
313 Zambia 12999 G 2 2
314 Zambia 13000 T 2 2
315 Zambia 13001 T 2 2
316 Zambia 13002 T 2 2
317 Zambia 13003 A 2 2
318 Zambia 13004 G 2 2
319 Zambia 13005 C 2 2
320 Zambia 13006 T 2 2
321 Zambia 13007 G 2 2
322 Zambia 13008 C 2 2
323 Zambia 13009 C 2 2
324 Zambia 13010 A 2 2
325 Zambia 13011 C 2 2
326 Zambia 13012 A 2 2
327 Zambia 13013 G 2 2
328 Zambia 13014 T 2 2
329 Zambia 13015 A 2 2
330 Zambia 13016 C 2 2
331 Zambia 13017 G 2 2
332 Zambia 13018 T 2 2
333 Zambia 13019 C 2 2
334 Zambia 13020 T 2 2
335 Zambia 13021 A 2 2
336 Zambia 13022 C 2 2
337 Zambia 13023 A 2 2
338 Zambia 13024 A 2 2