National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45         1                            
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36             1                        
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Vietnam 12686 A 116 116
1 Vietnam 12687 A 116 116
2 Vietnam 12688 T 116 116
3 Vietnam 12689 A 116 116
4 Vietnam 12690 A 116 116
5 Vietnam 12691 T 116 116
6 Vietnam 12692 G 116 116
7 Vietnam 12693 A 116 116
8 Vietnam 12694 G 116 116
9 Vietnam 12695 C 116 116
10 Vietnam 12696 T 116 116
11 Vietnam 12697 T 116 116
12 Vietnam 12698 A 116 116
13 Vietnam 12699 G 116 116
14 Vietnam 12700 T 116 116
15 Vietnam 12701 C 116 116
16 Vietnam 12702 C 116 116
17 Vietnam 12703 T 116 116
18 Vietnam 12704 G 116 116
19 Vietnam 12705 T 116 116
20 Vietnam 12706 T 116 116
21 Vietnam 12707 G 116 116
22 Vietnam 12708 C 116 116
23 Vietnam 12709 A 116 116
24 Vietnam 12710 C 116 116
25 Vietnam 12711 T 116 116
26 Vietnam 12712 A 116 116
27 Vietnam 12713 C 116 116
28 Vietnam 12714 G 116 116
29 Vietnam 12715 A 116 116
30 Vietnam 12716 C 116 116
31 Vietnam 12717 A 116 116
32 Vietnam 12718 G 116 116
33 Vietnam 12719 A 117 117
34 Vietnam 12720 T 117 117
35 Vietnam 12721 G 117 117
36 Vietnam 12722 T 117 117
37 Vietnam 12723 C 117 117
38 Vietnam 12724 T 117 117
39 Vietnam 12725 T 117 117
40 Vietnam 12726 G 117 117
41 Vietnam 12727 T 117 117
42 Vietnam 12728 G 117 117
43 Vietnam 12729 C 117 117
44 Vietnam 12730 T 117 117
45 Vietnam 12731 G 117 117
46 Vietnam 12732 C 117 117
47 Vietnam 12733 C 117 117
48 Vietnam 12734 G 117 117
49 Vietnam 12735 G 117 117
50 Vietnam 12736 T 117 117
51 Vietnam 12737 A 117 117
52 Vietnam 12738 C 117 117
53 Vietnam 12739 T 117 117
54 Vietnam 12740 A 117 117
55 Vietnam 12741 C 117 117
56 Vietnam 12742 A 117 117
57 Vietnam 12743 C 117 117
58 Vietnam 12744 A 117 117
59 Vietnam 12745 A 117 117
60 Vietnam 12746 A 117 117
61 Vietnam 12747 C 117 117
62 Vietnam 12748 T 117 117
63 Vietnam 12749 G 117 117
64 Vietnam 12750 C 117 117
65 Vietnam 12751 T 117 117
66 Vietnam 12752 T 117 117
67 Vietnam 12753 G 117 117
68 Vietnam 12754 C 117 117
69 Vietnam 12755 A 117 117
70 Vietnam 12756 C 117 117
71 Vietnam 12757 T 117 117
72 Vietnam 12758 G 117 117
73 Vietnam 12759 A 117 117
74 Vietnam 12760 T 117 117
75 Vietnam 12761 G 117 117
76 Vietnam 12762 A 117 117
77 Vietnam 12763 C 117 117
78 Vietnam 12764 A 117 117
79 Vietnam 12765 A 117 117
80 Vietnam 12766 T 117 117
81 Vietnam 12767 G 117 117
82 Vietnam 12768 C 117 117
83 Vietnam 12769 G 117 117
84 Vietnam 12770 T 117 117
85 Vietnam 12771 T 117 117
86 Vietnam 12772 A C 117 91 Leu4169Phe
87 Vietnam 12773 G 117 117
88 Vietnam 12774 C 117 117
89 Vietnam 12775 T 117 117
90 Vietnam 12776 T 117 117
91 Vietnam 12777 A 117 117
92 Vietnam 12778 C 117 117
93 Vietnam 12779 T 117 117
94 Vietnam 12780 A 117 117
95 Vietnam 12781 C 117 117
96 Vietnam 12782 A 117 117
97 Vietnam 12783 A 117 117
98 Vietnam 12784 C 117 117
99 Vietnam 12785 A 117 117
100 Vietnam 12786 C 117 117
101 Vietnam 12787 A 117 117
102 Vietnam 12788 A 117 117
103 Vietnam 12789 C 117 117
104 Vietnam 12790 A 117 117
105 Vietnam 12791 A 117 117
106 Vietnam 12792 A 117 117
107 Vietnam 12793 G 117 117
108 Vietnam 12794 G 117 117
109 Vietnam 12795 G 117 117
110 Vietnam 12796 A 117 117
111 Vietnam 12797 G 117 117
112 Vietnam 12798 G 117 117
113 Vietnam 12799 T 117 117
114 Vietnam 12800 A 117 117
115 Vietnam 12801 G 117 117
116 Vietnam 12802 G 117 117
117 Vietnam 12803 T 117 117
118 Vietnam 12804 T 117 117
119 Vietnam 12805 T 117 117
120 Vietnam 12806 G 117 117
121 Vietnam 12807 T 117 117
122 Vietnam 12808 A 117 117
123 Vietnam 12809 C 117 117
124 Vietnam 12810 T 117 117
125 Vietnam 12811 T 117 117
126 Vietnam 12812 G 117 117
127 Vietnam 12813 C 117 117
128 Vietnam 12814 A 117 117
129 Vietnam 12815 C 117 117
130 Vietnam 12816 T 117 117
131 Vietnam 12817 G 117 117
132 Vietnam 12818 T 117 117
133 Vietnam 12819 T 117 117
134 Vietnam 12820 A 117 117
135 Vietnam 12821 T 117 117
136 Vietnam 12822 C 117 117
137 Vietnam 12823 C 117 117
138 Vietnam 12824 G 117 117
139 Vietnam 12825 A 117 117
140 Vietnam 12826 T 117 117
141 Vietnam 12827 T 117 117
142 Vietnam 12828 T 117 117
143 Vietnam 12829 A 117 117
144 Vietnam 12830 C 117 117
145 Vietnam 12831 A 117 117
146 Vietnam 12832 G 117 117
147 Vietnam 12833 G 117 117
148 Vietnam 12834 A 117 117
149 Vietnam 12835 T 117 117
150 Vietnam 12836 T 117 117
151 Vietnam 12837 T 117 117
152 Vietnam 12838 G 117 117
153 Vietnam 12839 A 117 117
154 Vietnam 12840 A 117 117
155 Vietnam 12841 A 117 117
156 Vietnam 12842 T 117 117
157 Vietnam 12843 G 117 117
158 Vietnam 12844 G 117 117
159 Vietnam 12845 G 117 117
160 Vietnam 12846 C 117 117
161 Vietnam 12847 T 117 117
162 Vietnam 12848 A 117 117
163 Vietnam 12849 G 117 117
164 Vietnam 12850 A 117 117
165 Vietnam 12851 T 117 117
166 Vietnam 12852 T 117 117
167 Vietnam 12853 C 117 117
168 Vietnam 12854 C 117 117
169 Vietnam 12855 C 117 117
170 Vietnam 12856 T 117 117
171 Vietnam 12857 A 117 117
172 Vietnam 12858 A 117 117
173 Vietnam 12859 G 117 117
174 Vietnam 12860 A 117 117
175 Vietnam 12861 G 117 117
176 Vietnam 12862 T 117 117
177 Vietnam 12863 G 117 117
178 Vietnam 12864 A 117 117
179 Vietnam 12865 T 117 117
180 Vietnam 12866 G 117 117
181 Vietnam 12867 G 117 117
182 Vietnam 12868 A 117 117
183 Vietnam 12869 A 117 117
184 Vietnam 12870 C 117 117
185 Vietnam 12871 T 117 117
186 Vietnam 12872 G 117 117
187 Vietnam 12873 G 117 117
188 Vietnam 12874 T 117 117
189 Vietnam 12875 A 117 117
190 Vietnam 12876 C T 117 116 Thr4204Ile
191 Vietnam 12877 T 117 117
192 Vietnam 12878 A 117 117
193 Vietnam 12879 T 117 117
194 Vietnam 12880 C 117 117
195 Vietnam 12881 T 117 117
196 Vietnam 12882 A 117 117
197 Vietnam 12883 T 117 117
198 Vietnam 12884 A 117 117
199 Vietnam 12885 C 117 117
200 Vietnam 12886 A 117 117
201 Vietnam 12887 G 117 117
202 Vietnam 12888 A 117 117
203 Vietnam 12889 A 117 117
204 Vietnam 12890 C 117 117
205 Vietnam 12891 T 117 117
206 Vietnam 12892 G 117 117
207 Vietnam 12893 G 117 117
208 Vietnam 12894 A 117 117
209 Vietnam 12895 A 117 117
210 Vietnam 12896 C 117 117
211 Vietnam 12897 C 117 117
212 Vietnam 12898 A 117 117
213 Vietnam 12899 C 117 117
214 Vietnam 12900 C 117 117
215 Vietnam 12901 T 117 117
216 Vietnam 12902 T 117 117
217 Vietnam 12903 G 117 117
218 Vietnam 12904 T 117 117
219 Vietnam 12905 A 117 117
220 Vietnam 12906 G 117 117
221 Vietnam 12907 G 117 117
222 Vietnam 12908 T 117 117
223 Vietnam 12909 T 117 117
224 Vietnam 12910 T 117 117
225 Vietnam 12911 G 117 117
226 Vietnam 12912 T 117 117
227 Vietnam 12913 T 117 117
228 Vietnam 12914 A 117 117
229 Vietnam 12915 C 117 117
230 Vietnam 12916 A 117 117
231 Vietnam 12917 G 117 117
232 Vietnam 12918 A 117 117
233 Vietnam 12919 C 117 117
234 Vietnam 12920 A 117 117
235 Vietnam 12921 C 117 117
236 Vietnam 12922 A 117 117
237 Vietnam 12923 C 117 117
238 Vietnam 12924 C 117 117
239 Vietnam 12925 T 117 117
240 Vietnam 12926 A 117 117
241 Vietnam 12927 A 117 117
242 Vietnam 12928 A 117 117
243 Vietnam 12929 G 117 117
244 Vietnam 12930 G 117 117
245 Vietnam 12931 T 117 117
246 Vietnam 12932 C 117 117
247 Vietnam 12933 C 117 117
248 Vietnam 12934 T 117 117
249 Vietnam 12935 A 117 117
250 Vietnam 12936 A 117 117
251 Vietnam 12937 A 117 117
252 Vietnam 12938 G 117 117
253 Vietnam 12939 T 117 117
254 Vietnam 12940 G 117 117
255 Vietnam 12941 A 117 117
256 Vietnam 12942 A 117 117
257 Vietnam 12943 G 117 117
258 Vietnam 12944 T 117 117
259 Vietnam 12945 A 117 117
260 Vietnam 12946 T 117 117
261 Vietnam 12947 T 117 117
262 Vietnam 12948 T 117 117
263 Vietnam 12949 A 117 117
264 Vietnam 12950 T 117 117
265 Vietnam 12951 A 117 117
266 Vietnam 12952 C 117 117
267 Vietnam 12953 T 117 117
268 Vietnam 12954 T 117 117
269 Vietnam 12955 T 117 117
270 Vietnam 12956 A 117 117
271 Vietnam 12957 T 117 117
272 Vietnam 12958 T 117 117
273 Vietnam 12959 A 117 117
274 Vietnam 12960 A 117 117
275 Vietnam 12961 A 117 117
276 Vietnam 12962 G 117 117
277 Vietnam 12963 G 117 117
278 Vietnam 12964 A 117 117
279 Vietnam 12965 T 117 117
280 Vietnam 12966 T 117 117
281 Vietnam 12967 A 117 117
282 Vietnam 12968 A 117 117
283 Vietnam 12969 A 117 117
284 Vietnam 12970 C 117 117
285 Vietnam 12971 A 117 117
286 Vietnam 12972 A 117 117
287 Vietnam 12973 C 117 117
288 Vietnam 12974 C 117 117
289 Vietnam 12975 T 117 117
290 Vietnam 12976 A 117 117
291 Vietnam 12977 A 117 117
292 Vietnam 12978 A 117 117
293 Vietnam 12979 T 117 117
294 Vietnam 12980 A 117 117
295 Vietnam 12981 G 117 117
296 Vietnam 12982 A 117 117
297 Vietnam 12983 G 117 117
298 Vietnam 12984 G 117 117
299 Vietnam 12985 T 117 117
300 Vietnam 12986 A 117 117
301 Vietnam 12987 T 117 117
302 Vietnam 12988 G 117 117
303 Vietnam 12989 G 117 117
304 Vietnam 12990 T 117 117
305 Vietnam 12991 A 117 117
306 Vietnam 12992 C 117 117
307 Vietnam 12993 T 117 117
308 Vietnam 12994 T 117 117
309 Vietnam 12995 G 117 117
310 Vietnam 12996 G 117 117
311 Vietnam 12997 T 117 117
312 Vietnam 12998 A 117 117
313 Vietnam 12999 G 117 117
314 Vietnam 13000 T 117 117
315 Vietnam 13001 T 117 117
316 Vietnam 13002 T 117 117
317 Vietnam 13003 A 117 117
318 Vietnam 13004 G 117 117
319 Vietnam 13005 C 117 117
320 Vietnam 13006 T 117 117
321 Vietnam 13007 G 117 117
322 Vietnam 13008 C 117 117
323 Vietnam 13009 C 117 117
324 Vietnam 13010 A 117 117
325 Vietnam 13011 C 117 117
326 Vietnam 13012 A 117 117
327 Vietnam 13013 G 117 117
328 Vietnam 13014 T 117 117
329 Vietnam 13015 A 117 117
330 Vietnam 13016 C 117 117
331 Vietnam 13017 G 117 117
332 Vietnam 13018 T 117 117
333 Vietnam 13019 C 117 117
334 Vietnam 13020 T 117 117
335 Vietnam 13021 A 117 117
336 Vietnam 13022 C 117 117
337 Vietnam 13023 A 117 117
338 Vietnam 13024 A 117 117