National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Uzbekistan 12686 A <*> 2 2
1 Uzbekistan 12687 A <*> 2 2
2 Uzbekistan 12688 T <*> 2 2
3 Uzbekistan 12689 A <*> 2 2
4 Uzbekistan 12690 A <*> 2 2
5 Uzbekistan 12691 T <*> 2 2
6 Uzbekistan 12692 G <*> 2 2
7 Uzbekistan 12693 A <*> 2 2
8 Uzbekistan 12694 G <*> 2 2
9 Uzbekistan 12695 C <*> 2 2
10 Uzbekistan 12696 T <*> 2 2
11 Uzbekistan 12697 T <*> 2 2
12 Uzbekistan 12698 A <*> 2 2
13 Uzbekistan 12699 G <*> 2 2
14 Uzbekistan 12700 T <*> 2 2
15 Uzbekistan 12701 C <*> 2 2
16 Uzbekistan 12702 C <*> 2 2
17 Uzbekistan 12703 T <*> 2 2
18 Uzbekistan 12704 G <*> 2 2
19 Uzbekistan 12705 T <*> 2 2
20 Uzbekistan 12706 T <*> 2 2
21 Uzbekistan 12707 G <*> 2 2
22 Uzbekistan 12708 C <*> 2 2
23 Uzbekistan 12709 A <*> 2 2
24 Uzbekistan 12710 C <*> 2 2
25 Uzbekistan 12711 T <*> 2 2
26 Uzbekistan 12712 A <*> 2 2
27 Uzbekistan 12713 C <*> 2 2
28 Uzbekistan 12714 G <*> 2 2
29 Uzbekistan 12715 A <*> 2 2
30 Uzbekistan 12716 C <*> 2 2
31 Uzbekistan 12717 A <*> 2 2
32 Uzbekistan 12718 G <*> 2 2
33 Uzbekistan 12719 A <*> 2 2
34 Uzbekistan 12720 T <*> 2 2
35 Uzbekistan 12721 G <*> 2 2
36 Uzbekistan 12722 T <*> 2 2
37 Uzbekistan 12723 C <*> 2 2
38 Uzbekistan 12724 T <*> 2 2
39 Uzbekistan 12725 T <*> 2 2
40 Uzbekistan 12726 G <*> 2 2
41 Uzbekistan 12727 T <*> 2 2
42 Uzbekistan 12728 G <*> 2 2
43 Uzbekistan 12729 C <*> 2 2
44 Uzbekistan 12730 T <*> 2 2
45 Uzbekistan 12731 G <*> 2 2
46 Uzbekistan 12732 C <*> 2 2
47 Uzbekistan 12733 C <*> 2 2
48 Uzbekistan 12734 G <*> 2 2
49 Uzbekistan 12735 G <*> 2 2
50 Uzbekistan 12736 T <*> 2 2
51 Uzbekistan 12737 A <*> 2 2
52 Uzbekistan 12738 C <*> 2 2
53 Uzbekistan 12739 T <*> 2 2
54 Uzbekistan 12740 A <*> 2 2
55 Uzbekistan 12741 C <*> 2 2
56 Uzbekistan 12742 A <*> 2 2
57 Uzbekistan 12743 C <*> 2 2
58 Uzbekistan 12744 A <*> 2 2
59 Uzbekistan 12745 A <*> 2 2
60 Uzbekistan 12746 A <*> 2 2
61 Uzbekistan 12747 C <*> 2 2
62 Uzbekistan 12748 T <*> 2 2
63 Uzbekistan 12749 G <*> 2 2
64 Uzbekistan 12750 C <*> 2 2
65 Uzbekistan 12751 T <*> 2 2
66 Uzbekistan 12752 T <*> 2 2
67 Uzbekistan 12753 G <*> 2 2
68 Uzbekistan 12754 C <*> 2 2
69 Uzbekistan 12755 A <*> 2 2
70 Uzbekistan 12756 C <*> 2 2
71 Uzbekistan 12757 T <*> 2 2
72 Uzbekistan 12758 G <*> 2 2
73 Uzbekistan 12759 A <*> 2 2
74 Uzbekistan 12760 T <*> 2 2
75 Uzbekistan 12761 G <*> 2 2
76 Uzbekistan 12762 A <*> 2 2
77 Uzbekistan 12763 C <*> 2 2
78 Uzbekistan 12764 A <*> 2 2
79 Uzbekistan 12765 A <*> 2 2
80 Uzbekistan 12766 T <*> 2 2
81 Uzbekistan 12767 G <*> 2 2
82 Uzbekistan 12768 C <*> 2 2
83 Uzbekistan 12769 G <*> 2 2
84 Uzbekistan 12770 T <*> 2 2
85 Uzbekistan 12771 T <*> 2 2
86 Uzbekistan 12772 A <*> 2 2
87 Uzbekistan 12773 G <*> 2 2
88 Uzbekistan 12774 C <*> 2 2
89 Uzbekistan 12775 T <*> 2 2
90 Uzbekistan 12776 T <*> 2 2
91 Uzbekistan 12777 A <*> 2 2
92 Uzbekistan 12778 C <*> 2 2
93 Uzbekistan 12779 T <*> 2 2
94 Uzbekistan 12780 A <*> 2 2
95 Uzbekistan 12781 C <*> 2 2
96 Uzbekistan 12782 A <*> 2 2
97 Uzbekistan 12783 A <*> 2 2
98 Uzbekistan 12784 C <*> 2 2
99 Uzbekistan 12785 A <*> 2 2
100 Uzbekistan 12786 C <*> 2 2
101 Uzbekistan 12787 A <*> 2 2
102 Uzbekistan 12788 A <*> 2 2
103 Uzbekistan 12789 C <*> 2 2
104 Uzbekistan 12790 A <*> 2 2
105 Uzbekistan 12791 A <*> 2 2
106 Uzbekistan 12792 A <*> 2 2
107 Uzbekistan 12793 G <*> 2 2
108 Uzbekistan 12794 G <*> 2 2
109 Uzbekistan 12795 G <*> 2 2
110 Uzbekistan 12796 A <*> 2 2
111 Uzbekistan 12797 G <*> 2 2
112 Uzbekistan 12798 G <*> 2 2
113 Uzbekistan 12799 T <*> 2 2
114 Uzbekistan 12800 A <*> 2 2
115 Uzbekistan 12801 G <*> 2 2
116 Uzbekistan 12802 G <*> 2 2
117 Uzbekistan 12803 T <*> 2 2
118 Uzbekistan 12804 T <*> 2 2
119 Uzbekistan 12805 T <*> 2 2
120 Uzbekistan 12806 G <*> 2 2
121 Uzbekistan 12807 T <*> 2 2
122 Uzbekistan 12808 A <*> 2 2
123 Uzbekistan 12809 C <*> 2 2
124 Uzbekistan 12810 T <*> 2 2
125 Uzbekistan 12811 T <*> 2 2
126 Uzbekistan 12812 G <*> 2 2
127 Uzbekistan 12813 C <*> 2 2
128 Uzbekistan 12814 A <*> 2 2
129 Uzbekistan 12815 C <*> 2 2
130 Uzbekistan 12816 T <*> 2 2
131 Uzbekistan 12817 G <*> 2 2
132 Uzbekistan 12818 T <*> 2 2
133 Uzbekistan 12819 T <*> 2 2
134 Uzbekistan 12820 A <*> 2 2
135 Uzbekistan 12821 T <*> 2 2
136 Uzbekistan 12822 C <*> 2 2
137 Uzbekistan 12823 C <*> 2 2
138 Uzbekistan 12824 G <*> 2 2
139 Uzbekistan 12825 A <*> 2 2
140 Uzbekistan 12826 T <*> 2 2
141 Uzbekistan 12827 T <*> 2 2
142 Uzbekistan 12828 T <*> 2 2
143 Uzbekistan 12829 A <*> 2 2
144 Uzbekistan 12830 C <*> 2 2
145 Uzbekistan 12831 A <*> 2 2
146 Uzbekistan 12832 G <*> 2 2
147 Uzbekistan 12833 G <*> 2 2
148 Uzbekistan 12834 A <*> 2 2
149 Uzbekistan 12835 T <*> 2 2
150 Uzbekistan 12836 T <*> 2 2
151 Uzbekistan 12837 T <*> 2 2
152 Uzbekistan 12838 G <*> 2 2
153 Uzbekistan 12839 A <*> 2 2
154 Uzbekistan 12840 A <*> 2 2
155 Uzbekistan 12841 A <*> 2 2
156 Uzbekistan 12842 T <*> 2 2
157 Uzbekistan 12843 G <*> 2 2
158 Uzbekistan 12844 G <*> 2 2
159 Uzbekistan 12845 G <*> 2 2
160 Uzbekistan 12846 C <*> 2 2
161 Uzbekistan 12847 T <*> 2 2
162 Uzbekistan 12848 A <*> 2 2
163 Uzbekistan 12849 G <*> 2 2
164 Uzbekistan 12850 A <*> 2 2
165 Uzbekistan 12851 T <*> 2 2
166 Uzbekistan 12852 T <*> 2 2
167 Uzbekistan 12853 C <*> 2 2
168 Uzbekistan 12854 C <*> 2 2
169 Uzbekistan 12855 C <*> 2 2
170 Uzbekistan 12856 T <*> 2 2
171 Uzbekistan 12857 A <*> 2 2
172 Uzbekistan 12858 A <*> 2 2
173 Uzbekistan 12859 G <*> 2 2
174 Uzbekistan 12860 A <*> 2 2
175 Uzbekistan 12861 G <*> 2 2
176 Uzbekistan 12862 T <*> 2 2
177 Uzbekistan 12863 G <*> 2 2
178 Uzbekistan 12864 A <*> 2 2
179 Uzbekistan 12865 T <*> 2 2
180 Uzbekistan 12866 G <*> 2 2
181 Uzbekistan 12867 G <*> 2 2
182 Uzbekistan 12868 A <*> 2 2
183 Uzbekistan 12869 A <*> 2 2
184 Uzbekistan 12870 C <*> 2 2
185 Uzbekistan 12871 T <*> 2 2
186 Uzbekistan 12872 G <*> 2 2
187 Uzbekistan 12873 G <*> 2 2
188 Uzbekistan 12874 T <*> 2 2
189 Uzbekistan 12875 A <*> 2 2
190 Uzbekistan 12876 C <*> 2 2
191 Uzbekistan 12877 T <*> 2 2
192 Uzbekistan 12878 A <*> 2 2
193 Uzbekistan 12879 T <*> 2 2
194 Uzbekistan 12880 C <*> 2 2
195 Uzbekistan 12881 T <*> 2 2
196 Uzbekistan 12882 A <*> 2 2
197 Uzbekistan 12883 T <*> 2 2
198 Uzbekistan 12884 A <*> 2 2
199 Uzbekistan 12885 C <*> 2 2
200 Uzbekistan 12886 A <*> 2 2
201 Uzbekistan 12887 G <*> 2 2
202 Uzbekistan 12888 A <*> 2 2
203 Uzbekistan 12889 A <*> 2 2
204 Uzbekistan 12890 C <*> 2 2
205 Uzbekistan 12891 T <*> 2 2
206 Uzbekistan 12892 G <*> 2 2
207 Uzbekistan 12893 G <*> 2 2
208 Uzbekistan 12894 A <*> 2 2
209 Uzbekistan 12895 A <*> 2 2
210 Uzbekistan 12896 C <*> 2 2
211 Uzbekistan 12897 C <*> 2 2
212 Uzbekistan 12898 A <*> 2 2
213 Uzbekistan 12899 C <*> 2 2
214 Uzbekistan 12900 C <*> 2 2
215 Uzbekistan 12901 T <*> 2 2
216 Uzbekistan 12902 T <*> 2 2
217 Uzbekistan 12903 G <*> 2 2
218 Uzbekistan 12904 T <*> 2 2
219 Uzbekistan 12905 A <*> 2 2
220 Uzbekistan 12906 G <*> 2 2
221 Uzbekistan 12907 G <*> 2 2
222 Uzbekistan 12908 T <*> 2 2
223 Uzbekistan 12909 T <*> 2 2
224 Uzbekistan 12910 T <*> 2 2
225 Uzbekistan 12911 G <*> 2 2
226 Uzbekistan 12912 T <*> 2 2
227 Uzbekistan 12913 T <*> 2 2
228 Uzbekistan 12914 A <*> 2 2
229 Uzbekistan 12915 C <*> 2 2
230 Uzbekistan 12916 A <*> 2 2
231 Uzbekistan 12917 G <*> 2 2
232 Uzbekistan 12918 A <*> 2 2
233 Uzbekistan 12919 C <*> 2 2
234 Uzbekistan 12920 A <*> 2 2
235 Uzbekistan 12921 C <*> 2 2
236 Uzbekistan 12922 A <*> 2 2
237 Uzbekistan 12923 C <*> 2 2
238 Uzbekistan 12924 C <*> 2 2
239 Uzbekistan 12925 T <*> 2 2
240 Uzbekistan 12926 A <*> 2 2
241 Uzbekistan 12927 A <*> 2 2
242 Uzbekistan 12928 A <*> 2 2
243 Uzbekistan 12929 G <*> 2 2
244 Uzbekistan 12930 G <*> 2 2
245 Uzbekistan 12931 T <*> 2 2
246 Uzbekistan 12932 C <*> 2 2
247 Uzbekistan 12933 C <*> 2 2
248 Uzbekistan 12934 T <*> 2 2
249 Uzbekistan 12935 A <*> 2 2
250 Uzbekistan 12936 A <*> 2 2
251 Uzbekistan 12937 A <*> 2 2
252 Uzbekistan 12938 G <*> 2 2
253 Uzbekistan 12939 T <*> 2 2
254 Uzbekistan 12940 G <*> 2 2
255 Uzbekistan 12941 A <*> 2 2
256 Uzbekistan 12942 A <*> 2 2
257 Uzbekistan 12943 G <*> 2 2
258 Uzbekistan 12944 T <*> 2 2
259 Uzbekistan 12945 A <*> 2 2
260 Uzbekistan 12946 T <*> 2 2
261 Uzbekistan 12947 T <*> 2 2
262 Uzbekistan 12948 T <*> 2 2
263 Uzbekistan 12949 A <*> 2 2
264 Uzbekistan 12950 T <*> 2 2
265 Uzbekistan 12951 A <*> 2 2
266 Uzbekistan 12952 C <*> 2 2
267 Uzbekistan 12953 T <*> 2 2
268 Uzbekistan 12954 T <*> 2 2
269 Uzbekistan 12955 T <*> 2 2
270 Uzbekistan 12956 A <*> 2 2
271 Uzbekistan 12957 T <*> 2 2
272 Uzbekistan 12958 T <*> 2 2
273 Uzbekistan 12959 A <*> 2 2
274 Uzbekistan 12960 A <*> 2 2
275 Uzbekistan 12961 A <*> 2 2
276 Uzbekistan 12962 G <*> 2 2
277 Uzbekistan 12963 G <*> 2 2
278 Uzbekistan 12964 A <*> 2 2
279 Uzbekistan 12965 T <*> 2 2
280 Uzbekistan 12966 T <*> 2 2
281 Uzbekistan 12967 A <*> 2 2
282 Uzbekistan 12968 A <*> 2 2
283 Uzbekistan 12969 A <*> 2 2
284 Uzbekistan 12970 C <*> 2 2
285 Uzbekistan 12971 A <*> 2 2
286 Uzbekistan 12972 A <*> 2 2
287 Uzbekistan 12973 C <*> 2 2
288 Uzbekistan 12974 C <*> 2 2
289 Uzbekistan 12975 T <*> 2 2
290 Uzbekistan 12976 A <*> 2 2
291 Uzbekistan 12977 A <*> 2 2
292 Uzbekistan 12978 A <*> 2 2
293 Uzbekistan 12979 T <*> 2 2
294 Uzbekistan 12980 A <*> 2 2
295 Uzbekistan 12981 G <*> 2 2
296 Uzbekistan 12982 A <*> 2 2
297 Uzbekistan 12983 G <*> 2 2
298 Uzbekistan 12984 G <*> 2 2
299 Uzbekistan 12985 T <*> 2 2
300 Uzbekistan 12986 A <*> 2 2
301 Uzbekistan 12987 T <*> 2 2
302 Uzbekistan 12988 G <*> 2 2
303 Uzbekistan 12989 G <*> 2 2
304 Uzbekistan 12990 T <*> 2 2
305 Uzbekistan 12991 A <*> 2 2
306 Uzbekistan 12992 C <*> 2 2
307 Uzbekistan 12993 T <*> 2 2
308 Uzbekistan 12994 T <*> 2 2
309 Uzbekistan 12995 G <*> 2 2
310 Uzbekistan 12996 G <*> 2 2
311 Uzbekistan 12997 T <*> 2 2
312 Uzbekistan 12998 A <*> 2 2
313 Uzbekistan 12999 G <*> 2 2
314 Uzbekistan 13000 T <*> 2 2
315 Uzbekistan 13001 T <*> 2 2
316 Uzbekistan 13002 T <*> 2 2
317 Uzbekistan 13003 A <*> 2 2
318 Uzbekistan 13004 G <*> 2 2
319 Uzbekistan 13005 C <*> 2 2
320 Uzbekistan 13006 T <*> 2 2
321 Uzbekistan 13007 G <*> 2 2
322 Uzbekistan 13008 C <*> 2 2
323 Uzbekistan 13009 C <*> 2 2
324 Uzbekistan 13010 A <*> 2 2
325 Uzbekistan 13011 C <*> 2 2
326 Uzbekistan 13012 A <*> 2 2
327 Uzbekistan 13013 G <*> 2 2
328 Uzbekistan 13014 T <*> 2 2
329 Uzbekistan 13015 A <*> 2 2
330 Uzbekistan 13016 C <*> 2 2
331 Uzbekistan 13017 G <*> 2 2
332 Uzbekistan 13018 T <*> 2 2
333 Uzbekistan 13019 C <*> 2 2
334 Uzbekistan 13020 T <*> 2 2
335 Uzbekistan 13021 A <*> 2 2
336 Uzbekistan 13022 C <*> 2 2
337 Uzbekistan 13023 A <*> 2 2
338 Uzbekistan 13024 A <*> 2 2