National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                 1    
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Uganda 12686 A 133 133
1 Uganda 12687 A 133 133
2 Uganda 12688 T 133 133
3 Uganda 12689 A 133 133
4 Uganda 12690 A 133 133
5 Uganda 12691 T 133 133
6 Uganda 12692 G 133 133
7 Uganda 12693 A 133 133
8 Uganda 12694 G 133 133
9 Uganda 12695 C 133 133
10 Uganda 12696 T 133 133
11 Uganda 12697 T 133 133
12 Uganda 12698 A 133 133
13 Uganda 12699 G 133 133
14 Uganda 12700 T 133 133
15 Uganda 12701 C 133 133
16 Uganda 12702 C 133 133
17 Uganda 12703 T 133 133
18 Uganda 12704 G 133 133
19 Uganda 12705 T 133 133
20 Uganda 12706 T 133 133
21 Uganda 12707 G 133 133
22 Uganda 12708 C 133 133
23 Uganda 12709 A 133 133
24 Uganda 12710 C 133 133
25 Uganda 12711 T 133 133
26 Uganda 12712 A 133 133
27 Uganda 12713 C 133 133
28 Uganda 12714 G 133 133
29 Uganda 12715 A 133 133
30 Uganda 12716 C 133 133
31 Uganda 12717 A 133 133
32 Uganda 12718 G 133 133
33 Uganda 12719 A 133 133
34 Uganda 12720 T 133 133
35 Uganda 12721 G 133 133
36 Uganda 12722 T 133 133
37 Uganda 12723 C 133 133
38 Uganda 12724 T 133 133
39 Uganda 12725 T 133 133
40 Uganda 12726 G 133 133
41 Uganda 12727 T 133 133
42 Uganda 12728 G 133 133
43 Uganda 12729 C 133 133
44 Uganda 12730 T 133 133
45 Uganda 12731 G 133 133
46 Uganda 12732 C 133 133
47 Uganda 12733 C 133 133
48 Uganda 12734 G 133 133
49 Uganda 12735 G 133 133
50 Uganda 12736 T 133 133
51 Uganda 12737 A 133 133
52 Uganda 12738 C 133 133
53 Uganda 12739 T 133 133
54 Uganda 12740 A 133 133
55 Uganda 12741 C 133 133
56 Uganda 12742 A 133 133
57 Uganda 12743 C 133 133
58 Uganda 12744 A 133 133
59 Uganda 12745 A 133 133
60 Uganda 12746 A 133 133
61 Uganda 12747 C 133 133
62 Uganda 12748 T 133 133
63 Uganda 12749 G 133 133
64 Uganda 12750 C 133 133
65 Uganda 12751 T 133 133
66 Uganda 12752 T 133 133
67 Uganda 12753 G 133 133
68 Uganda 12754 C 133 133
69 Uganda 12755 A 133 133
70 Uganda 12756 C 133 133
71 Uganda 12757 T 133 133
72 Uganda 12758 G 133 133
73 Uganda 12759 A 133 133
74 Uganda 12760 T 133 133
75 Uganda 12761 G 133 133
76 Uganda 12762 A 133 133
77 Uganda 12763 C 133 133
78 Uganda 12764 A 133 133
79 Uganda 12765 A 133 133
80 Uganda 12766 T 133 133
81 Uganda 12767 G 133 133
82 Uganda 12768 C 133 133
83 Uganda 12769 G 133 133
84 Uganda 12770 T 133 133
85 Uganda 12771 T 133 133
86 Uganda 12772 A 133 133
87 Uganda 12773 G 133 133
88 Uganda 12774 C 133 133
89 Uganda 12775 T 133 133
90 Uganda 12776 T 133 133
91 Uganda 12777 A 133 133
92 Uganda 12778 C 133 133
93 Uganda 12779 T 133 133
94 Uganda 12780 A 133 133
95 Uganda 12781 C 133 133
96 Uganda 12782 A 133 133
97 Uganda 12783 A 133 133
98 Uganda 12784 C 133 133
99 Uganda 12785 A 133 133
100 Uganda 12786 C 133 133
101 Uganda 12787 A 133 133
102 Uganda 12788 A 133 133
103 Uganda 12789 C 133 133
104 Uganda 12790 A 133 133
105 Uganda 12791 A 133 133
106 Uganda 12792 A 133 133
107 Uganda 12793 G 133 133
108 Uganda 12794 G 133 133
109 Uganda 12795 G 133 133
110 Uganda 12796 A 133 133
111 Uganda 12797 G 133 133
112 Uganda 12798 G 133 133
113 Uganda 12799 T 133 133
114 Uganda 12800 A 133 133
115 Uganda 12801 G 133 133
116 Uganda 12802 G 133 133
117 Uganda 12803 T 133 133
118 Uganda 12804 T 133 133
119 Uganda 12805 T 133 133
120 Uganda 12806 G 133 133
121 Uganda 12807 T 133 133
122 Uganda 12808 A 133 133
123 Uganda 12809 C 133 133
124 Uganda 12810 T 133 133
125 Uganda 12811 T 133 133
126 Uganda 12812 G 133 133
127 Uganda 12813 C 133 133
128 Uganda 12814 A 133 133
129 Uganda 12815 C 133 133
130 Uganda 12816 T 133 133
131 Uganda 12817 G 133 133
132 Uganda 12818 T 133 133
133 Uganda 12819 T 133 133
134 Uganda 12820 A 133 133
135 Uganda 12821 T 133 133
136 Uganda 12822 C 133 133
137 Uganda 12823 C 133 133
138 Uganda 12824 G 133 133
139 Uganda 12825 A 133 133
140 Uganda 12826 T 133 133
141 Uganda 12827 T 133 133
142 Uganda 12828 T 133 133
143 Uganda 12829 A 133 133
144 Uganda 12830 C 133 133
145 Uganda 12831 A 133 133
146 Uganda 12832 G 133 133
147 Uganda 12833 G 133 133
148 Uganda 12834 A 133 133
149 Uganda 12835 T 133 133
150 Uganda 12836 T 133 133
151 Uganda 12837 T 133 133
152 Uganda 12838 G 133 133
153 Uganda 12839 A 133 133
154 Uganda 12840 A 133 133
155 Uganda 12841 A 133 132
156 Uganda 12842 T 133 133
157 Uganda 12843 G 133 133
158 Uganda 12844 G 133 133
159 Uganda 12845 G 133 133
160 Uganda 12846 C 133 133
161 Uganda 12847 T 133 133
162 Uganda 12848 A 133 133
163 Uganda 12849 G 133 133
164 Uganda 12850 A 133 133
165 Uganda 12851 T 133 133
166 Uganda 12852 T 133 133
167 Uganda 12853 C 133 133
168 Uganda 12854 C 133 133
169 Uganda 12855 C 133 133
170 Uganda 12856 T 133 132
171 Uganda 12857 A 133 133
172 Uganda 12858 A 133 132
173 Uganda 12859 G 133 133
174 Uganda 12860 A 133 133
175 Uganda 12861 G 133 133
176 Uganda 12862 T 133 133
177 Uganda 12863 G 133 133
178 Uganda 12864 A 133 133
179 Uganda 12865 T 133 133
180 Uganda 12866 G 133 133
181 Uganda 12867 G 133 133
182 Uganda 12868 A 133 133
183 Uganda 12869 A 133 132
184 Uganda 12870 C 133 133
185 Uganda 12871 T 133 133
186 Uganda 12872 G 133 133
187 Uganda 12873 G 133 133
188 Uganda 12874 T 133 133
189 Uganda 12875 A 133 133
190 Uganda 12876 C 133 133
191 Uganda 12877 T 133 133
192 Uganda 12878 A G 133 132 Ile4205Val
193 Uganda 12879 T 133 133
194 Uganda 12880 C 133 133
195 Uganda 12881 T 133 133
196 Uganda 12882 A 133 133
197 Uganda 12883 T 133 133
198 Uganda 12884 A 133 133
199 Uganda 12885 C 133 132
200 Uganda 12886 A 133 133
201 Uganda 12887 G 133 133
202 Uganda 12888 A 133 133
203 Uganda 12889 A 133 133
204 Uganda 12890 C 133 132
205 Uganda 12891 T 133 133
206 Uganda 12892 G 133 133
207 Uganda 12893 G 133 133
208 Uganda 12894 A 133 133
209 Uganda 12895 A 133 133
210 Uganda 12896 C 133 133
211 Uganda 12897 C 133 133
212 Uganda 12898 A 133 133
213 Uganda 12899 C 133 133
214 Uganda 12900 C 133 133
215 Uganda 12901 T 133 133
216 Uganda 12902 T 133 133
217 Uganda 12903 G 133 133
218 Uganda 12904 T 133 133
219 Uganda 12905 A 133 133
220 Uganda 12906 G 133 133
221 Uganda 12907 G 133 133
222 Uganda 12908 T 133 133
223 Uganda 12909 T 133 133
224 Uganda 12910 T 133 133
225 Uganda 12911 G 133 133
226 Uganda 12912 T 133 133
227 Uganda 12913 T 133 133
228 Uganda 12914 A 133 133
229 Uganda 12915 C 133 133
230 Uganda 12916 A 133 132
231 Uganda 12917 G 133 132
232 Uganda 12918 A 133 133
233 Uganda 12919 C 133 132
234 Uganda 12920 A 133 133
235 Uganda 12921 C 133 132
236 Uganda 12922 A 133 133
237 Uganda 12923 C 133 133
238 Uganda 12924 C 133 133
239 Uganda 12925 T 133 133
240 Uganda 12926 A 133 133
241 Uganda 12927 A 133 133
242 Uganda 12928 A 133 133
243 Uganda 12929 G 133 133
244 Uganda 12930 G 133 133
245 Uganda 12931 T 133 133
246 Uganda 12932 C 133 133
247 Uganda 12933 C 133 133
248 Uganda 12934 T 133 133
249 Uganda 12935 A 133 133
250 Uganda 12936 A 133 133
251 Uganda 12937 A 133 133
252 Uganda 12938 G 133 133
253 Uganda 12939 T 133 133
254 Uganda 12940 G 133 133
255 Uganda 12941 A 133 133
256 Uganda 12942 A 133 133
257 Uganda 12943 G 133 133
258 Uganda 12944 T 133 133
259 Uganda 12945 A 133 133
260 Uganda 12946 T 133 133
261 Uganda 12947 T 133 133
262 Uganda 12948 T 132 132
263 Uganda 12949 A 132 132
264 Uganda 12950 T 132 132
265 Uganda 12951 A 132 132
266 Uganda 12952 C 132 132
267 Uganda 12953 T 132 132
268 Uganda 12954 T 132 132
269 Uganda 12955 T 132 132
270 Uganda 12956 A 132 132
271 Uganda 12957 T 132 132
272 Uganda 12958 T 132 132
273 Uganda 12959 A 132 132
274 Uganda 12960 A 132 132
275 Uganda 12961 A 132 132
276 Uganda 12962 G 132 132
277 Uganda 12963 G 132 132
278 Uganda 12964 A 132 132
279 Uganda 12965 T 132 132
280 Uganda 12966 T 132 132
281 Uganda 12967 A 132 132
282 Uganda 12968 A 132 132
283 Uganda 12969 A 132 131
284 Uganda 12970 C 132 132
285 Uganda 12971 A 132 132
286 Uganda 12972 A 132 132
287 Uganda 12973 C 132 131
288 Uganda 12974 C 132 132
289 Uganda 12975 T 132 132
290 Uganda 12976 A 132 132
291 Uganda 12977 A 132 132
292 Uganda 12978 A 132 132
293 Uganda 12979 T 132 132
294 Uganda 12980 A 132 132
295 Uganda 12981 G 132 132
296 Uganda 12982 A 132 132
297 Uganda 12983 G 132 132
298 Uganda 12984 G 132 132
299 Uganda 12985 T 132 132
300 Uganda 12986 A 132 132
301 Uganda 12987 T 132 132
302 Uganda 12988 G 132 132
303 Uganda 12989 G 132 132
304 Uganda 12990 T 132 132
305 Uganda 12991 A 132 132
306 Uganda 12992 C 132 132
307 Uganda 12993 T 132 132
308 Uganda 12994 T 132 132
309 Uganda 12995 G 132 132
310 Uganda 12996 G 132 132
311 Uganda 12997 T 132 132
312 Uganda 12998 A 132 132
313 Uganda 12999 G 132 132
314 Uganda 13000 T 132 132
315 Uganda 13001 T 132 132
316 Uganda 13002 T 132 132
317 Uganda 13003 A 132 132
318 Uganda 13004 G 132 132
319 Uganda 13005 C 132 132
320 Uganda 13006 T 132 132
321 Uganda 13007 G 132 132
322 Uganda 13008 C 132 132
323 Uganda 13009 C 132 132
324 Uganda 13010 A 132 132
325 Uganda 13011 C 132 132
326 Uganda 13012 A 132 132
327 Uganda 13013 G 132 132
328 Uganda 13014 T 132 132
329 Uganda 13015 A 132 132
330 Uganda 13016 C 132 132
331 Uganda 13017 G 132 132
332 Uganda 13018 T 132 132
333 Uganda 13019 C 132 132
334 Uganda 13020 T 132 132
335 Uganda 13021 A 132 132
336 Uganda 13022 C 132 132
337 Uganda 13023 A 132 132
338 Uganda 13024 A 132 132