National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*                                              
-     337                                        
?                                              
A     30 13     2                 1     3 5 9    
C     9   2     1                   1 1       1
D     18 2   5 2   3           5           1   1
E 1   9     2 2                   1            
F     12   1     3         1                    
G 2   26   2   2   7                 4 4   1    
H                                              
I     6               2                 1 1    
K     21                 6     2   1 4   1      
L     45         4     2   24 1   1   2 3        
M     6               4   1         1   2 2    
N     21                 1     7       2        
P     18             2     5     5 1   6 2      
Q 2   12             1     1       2 1          
R     18               1 1         1 7 1        
S     15         1 3   2       2 1     7        
T     35 8             12 2               14      
V     18 1             4   1               7    
W     3   1                                    
Y     15   1         1                         5

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 USA 12686 A 87838 87838
1 USA 12687 A 87838 87837
2 USA 12688 T C 87840 87836 Asn4141Asn
3 USA 12689 A 87841 87841
4 USA 12690 A 87842 87842
5 USA 12691 T C 87844 87842 Asn4142Asn
6 USA 12692 G 87845 87843
7 USA 12693 A 87846 87845
8 USA 12694 G A,T 87846 87805 Glu4143Asp-p.Glu4143Glu
9 USA 12695 C T 87846 87821 Leu4144Phe
10 USA 12696 T 87846 87843
11 USA 12697 T 87847 87845
12 USA 12698 A G 87847 87807 Ser4145Gly
13 USA 12699 G A 87848 87842 Ser4145Asn
14 USA 12700 T C 87848 87845 Ser4145Ser
15 USA 12701 C T 87851 87845 Pro4146Ser
16 USA 12702 C T 87852 87848 Pro4146Leu
17 USA 12703 T C 87853 87847 Pro4146Pro
18 USA 12704 G A 87853 87845 Val4147Ile
19 USA 12705 T C 87854 87847 Val4147Ala
20 USA 12706 T C,A 87854 87847 Val4147Val-p.Val4147Val
21 USA 12707 G T 87854 87848 Ala4148Ser
22 USA 12708 C T,A 87856 87741 Ala4148Val-p.Ala4148Glu
23 USA 12709 A G,T 87856 87845 Ala4148Ala-p.Ala4148Ala
24 USA 12710 C T,A 87857 87845 Leu4149Ile-p.Leu4149Leu
25 USA 12711 T C 87859 87853 Leu4149Pro
26 USA 12712 A G 87864 87858 Leu4149Leu
27 USA 12713 C A 87865 87856 Arg4150Arg
28 USA 12714 G A 87867 87855 Arg4150Gln
29 USA 12715 A G 87868 87857 Arg4150Arg
30 USA 12716 C T 87887 87881 Gln4151*
31 USA 12717 A G 87890 87877 Gln4151Arg
32 USA 12718 G A 87917 87903 Gln4151Gln
33 USA 12719 A G,C 87919 87894 Met4152Val-p.Met4152Leu
34 USA 12720 T G,C 87920 87908 Met4152Arg-p.Met4152Thr
35 USA 12721 G T,A 87924 87905 Met4152Ile-p.Met4152Ile
36 USA 12722 T C 87925 87913 Ser4153Pro
37 USA 12723 C T 87926 87910 Ser4153Phe
38 USA 12724 T G,C 87929 87917 Ser4153Ser-p.Ser4153Ser
39 USA 12725 T 87929 87920
40 USA 12726 G 87929 87919
41 USA 12727 T 87929 87920
42 USA 12728 G 87928 87916
43 USA 12729 C T 87928 87909 Ala4155Val
44 USA 12730 T G 87928 87916 Ala4155Ala
45 USA 12731 G A 87928 87899 Ala4156Thr
46 USA 12732 C 87928 87916
47 USA 12733 C T,A 88019 87939 Ala4156Ala-p.Ala4156Ala
48 USA 12734 G A 88019 88010 Gly4157Ser
49 USA 12735 G 88020 88017
50 USA 12736 T C 88020 88015 Gly4157Gly
51 USA 12737 A G 88020 87963 Thr4158Ala
52 USA 12738 C T 88020 88011 Thr4158Ile
53 USA 12739 T C 88020 88016 Thr4158Thr
54 USA 12740 A 88020 88017
55 USA 12741 C T,A 88021 87950 Thr4159Ile-p.Thr4159Lys
56 USA 12742 A G 88021 88018 Thr4159Thr
57 USA 12743 C 88021 88019
58 USA 12744 A T 88020 88016 Gln4160Leu
59 USA 12745 A 88022 88019
60 USA 12746 A G 88015 88006 Thr4161Ala
61 USA 12747 C T 88016 87975 Thr4161Ile
62 USA 12748 T C,A 88016 88008 Thr4161Thr-p.Thr4161Thr
63 USA 12749 G A 88016 88010 Ala4162Thr
64 USA 12750 C T 88016 87999 Ala4162Val
65 USA 12751 T G 88016 88003 Ala4162Ala
66 USA 12752 T 88016 88014
67 USA 12753 G A,C 88016 88003 Cys4163Tyr-p.Cys4163Ser
68 USA 12754 C T 88017 87921 Cys4163Cys
69 USA 12755 A 88017 88015
70 USA 12756 C T 88017 87918 Thr4164Ile
71 USA 12757 T C 88017 88012 Thr4164Thr
72 USA 12758 G A 88017 88010 Asp4165Asn
73 USA 12759 A G,C 88017 88003 Asp4165Gly-p.Asp4165Ala
74 USA 12760 T C 88017 88010 Asp4165Asp
75 USA 12761 G T 88019 88014 Asp4166Tyr
76 USA 12762 A 88019 88015
77 USA 12763 C T 88019 87978 Asp4166Asp
78 USA 12764 A 88019 88014
79 USA 12765 A G 88019 88013 Asn4167Ser
80 USA 12766 T G,C 88019 88012 Asn4167Lys-p.Asn4167Asn
81 USA 12767 G A 88019 88013 Ala4168Thr
82 USA 12768 C T 88019 88012 Ala4168Val
83 USA 12769 G T,A 88019 87990 Ala4168Ala-p.Ala4168Ala
84 USA 12770 T C 88019 88011 Leu4169Leu
85 USA 12771 T 88019 88013
86 USA 12772 A G 88019 87996 Leu4169Leu
87 USA 12773 G 88019 88011
88 USA 12774 C T 88019 87983 Ala4170Val
89 USA 12775 T C 88020 88011 Ala4170Ala
90 USA 12776 T 88019 88013
91 USA 12777 A 88019 88013
92 USA 12778 C T 88019 87998 Tyr4171Tyr
93 USA 12779 T C 88019 88013 Tyr4172His
94 USA 12780 A 87951 87927
95 USA 12781 C T 87952 87836 Tyr4172Tyr
96 USA 12782 A 87951 87926
97 USA 12783 A G 87951 87924 Asn4173Ser
98 USA 12784 C T 87951 87882 Asn4173Asn
99 USA 12785 A G 87952 87926 Thr4174Ala
100 USA 12786 C T 87952 87903 Thr4174Ile
101 USA 12787 A G 87952 87916 Thr4174Thr
102 USA 12788 A G 87952 87926 Thr4175Ala
103 USA 12789 C T,A 87952 87833 Thr4175Ile-p.Thr4175Lys
104 USA 12790 A T,G,C 87951 87923 Thr4175Thr-p.Thr4175Thr
105 USA 12791 A 87951 87927
106 USA 12792 A G,C 87947 87908 Lys4176Arg-p.Lys4176Thr
107 USA 12793 G T,A 87947 87888 Lys4176Asn-p.Lys4176Lys
108 USA 12794 G A 87946 87899 Gly4177Arg
109 USA 12795 G A 87938 87911 Gly4177Glu
110 USA 12796 A G 87913 87885 Gly4177Gly
111 USA 12797 G A,T 87906 87851 Gly4178Ser-p.Gly4178Cys
112 USA 12798 G T 87905 87868 Gly4178Val
113 USA 12799 T 87905 87878
114 USA 12800 A 87904 87878
115 USA 12801 G 87904 87884
116 USA 12802 G A 87902 87878 Arg4179Arg
117 USA 12803 T 87899 87873
118 USA 12804 T 87897 87876
119 USA 12805 T C 87896 87862 Phe4180Phe
120 USA 12806 G A 87903 87884 Val4181Ile
121 USA 12807 T 87902 87886
122 USA 12808 A G 87901 87884 Val4181Val
123 USA 12809 C T 87901 87740 Leu4182Phe
124 USA 12810 T G 87899 87879 Leu4182Arg
125 USA 12811 T 87899 87884
126 USA 12812 G T 87899 87873 Ala4183Ser
127 USA 12813 C T,A 87899 87880 Ala4183Val-p.Ala4183Glu
128 USA 12814 A 87899 87882
129 USA 12815 C T,A 87900 87862 Leu4184Met-p.Leu4184Leu
130 USA 12816 T 87900 87884
131 USA 12817 G A,T 87900 87838 Leu4184Leu-p.Leu4184Leu
132 USA 12818 T C 87899 87882 Leu4185Leu
133 USA 12819 T C 87899 87883 Leu4185Ser
134 USA 12820 A G 87899 87720 Leu4185Leu
135 USA 12821 T 87899 87883
136 USA 12822 C 87899 87886
137 USA 12823 C T,G 87899 87843 Ser4186Ser-p.Ser4186Ser
138 USA 12824 G A 87896 87864 Asp4187Asn
139 USA 12825 A G 87896 87881 Asp4187Gly
140 USA 12826 T 87896 87878
141 USA 12827 T C 87896 87877 Leu4188Leu
142 USA 12828 T C 87896 87880 Leu4188Ser
143 USA 12829 A G 87894 87869 Leu4188Leu
144 USA 12830 C T 87893 87872 Gln4189*
145 USA 12831 A 87893 87877
146 USA 12832 G T,A 87893 87717 Gln4189His-p.Gln4189Gln
147 USA 12833 G A 87893 87877 Asp4190Asn
148 USA 12834 A C,G 87894 87876 Asp4190Ala-p.Asp4190Gly
149 USA 12835 T C,G 87894 87862 Asp4190Glu-p.Asp4190Asp
150 USA 12836 T C 87895 87880 Leu4191Leu
151 USA 12837 T 87894 87880
152 USA 12838 G A,T 87894 87874 Leu4191Phe-p.Leu4191Leu
153 USA 12839 A C 87894 87878 Lys4192Gln
154 USA 12840 A 87894 87879
155 USA 12841 A G 87894 87872 Lys4192Lys
156 USA 12842 T 87894 87875
157 USA 12843 G 87892 87878
158 USA 12844 G T 87892 87875 Trp4193Cys
159 USA 12845 G T,C 87892 87872 Ala4194Ser-p.Ala4194Pro
160 USA 12846 C T 87892 87867 Ala4194Val
161 USA 12847 T C 87892 87876 Ala4194Ala
162 USA 12848 A 87892 87881
163 USA 12849 G 87892 87880
164 USA 12850 A G 87891 87601 Arg4195Arg
165 USA 12851 T 87892 87876
166 USA 12852 T 87893 87870
167 USA 12853 C T 87893 87862 Phe4196Phe
168 USA 12854 C A,T 87893 87791 Pro4197Thr-p.Pro4197Ser
169 USA 12855 C T 87893 87871 Pro4197Leu
170 USA 12856 T 87892 87882
171 USA 12857 A 87891 87881
172 USA 12858 A G 87891 87878 Lys4198Arg
173 USA 12859 G A,T 87892 87877 Lys4198Asn-p.Lys4198Lys
174 USA 12860 A G 87892 87879 Ser4199Gly
175 USA 12861 G T 87892 87879 Ser4199Ile
176 USA 12862 T C 87889 87876 Ser4199Ser
177 USA 12863 G A 87888 87873 Asp4200Asn
178 USA 12864 A T 87888 87875 Asp4200Val
179 USA 12865 T C 87889 87875 Asp4200Asp
180 USA 12866 G T,C,A 87889 87879 Gly4201Arg-p.Gly4201Arg
181 USA 12867 G A 87890 87883 Gly4201Glu
182 USA 12868 A G,C 87889 87853 Gly4201Gly-p.Gly4201Gly
183 USA 12869 A G 87889 87877 Thr4202Ala
184 USA 12870 C T 87890 87862 Thr4202Ile
185 USA 12871 T C 87890 87881 Thr4202Thr
186 USA 12872 G A 87889 87878 Gly4203Ser
187 USA 12873 G 87889 87879
188 USA 12874 T C 87888 87879 Gly4203Gly
189 USA 12875 A G 87886 87877 Thr4204Ala
190 USA 12876 C T 87885 87856 Thr4204Ile
191 USA 12877 T 87885 87875
192 USA 12878 A G 87885 86983 Ile4205Val
193 USA 12879 T C 87884 87872 Ile4205Thr
194 USA 12880 C T 87884 87558 Ile4205Ile
195 USA 12881 T 87883 87871
196 USA 12882 A 87882 87870
197 USA 12883 T C 87882 87771 Tyr4206Tyr
198 USA 12884 A G 87882 87870 Thr4207Ala
199 USA 12885 C T 87882 87806 Thr4207Ile
200 USA 12886 A G 87879 87858 Thr4207Thr
201 USA 12887 G T 87879 87862 Glu4208*
202 USA 12888 A 87878 87860
203 USA 12889 A G,C 87877 87861 Glu4208Asp-p.Glu4208Glu
204 USA 12890 C T 87877 87850 Leu4209Leu
205 USA 12891 T G 87877 87860 Leu4209Arg
206 USA 12892 G T,A 87877 87843 Leu4209Leu-p.Leu4209Leu
207 USA 12893 G C 87877 87857 Glu4210Gln
208 USA 12894 A 87876 87858
209 USA 12895 A 87876 87859
210 USA 12896 C T,A 87875 87842 Pro4211Ser-p.Pro4211Thr
211 USA 12897 C T,A 87873 87828 Pro4211Leu-p.Pro4211Gln
212 USA 12898 A 87873 87857
213 USA 12899 C T 87873 87854 Pro4212Ser
214 USA 12900 C 87873 87855
215 USA 12901 T A,C 87872 87850 Pro4212Pro-p.Pro4212Pro
216 USA 12902 T C 87872 87855 Cys4213Arg
217 USA 12903 G T 87872 87856 Cys4213Phe
218 USA 12904 T C 87872 87853 Cys4213Cys
219 USA 12905 A 87873 87857
220 USA 12906 G A 87872 87855 Arg4214Lys
221 USA 12907 G A,T 87872 87853 Arg4214Ser-p.Arg4214Arg
222 USA 12908 T 87870 87850
223 USA 12909 T G 87870 87851 Phe4215Cys
224 USA 12910 T A 87870 87851 Phe4215Leu
225 USA 12911 G A 87870 87851 Val4216Ile
226 USA 12912 T 87870 87850
227 USA 12913 T C,A 87870 87846 Val4216Val-p.Val4216Val
228 USA 12914 A 87869 87848
229 USA 12915 C T 87869 87831 Thr4217Ile
230 USA 12916 A T 87869 87847 Thr4217Thr
231 USA 12917 G A 87869 87845 Asp4218Asn
232 USA 12918 A 87869 87847
233 USA 12919 C T,A 87868 87830 Asp4218Glu-p.Asp4218Asp
234 USA 12920 A G 87867 87845 Thr4219Ala
235 USA 12921 C T 87867 87830 Thr4219Ile
236 USA 12922 A G 87867 87845 Thr4219Thr
237 USA 12923 C T 87868 87835 Pro4220Ser
238 USA 12924 C T,A 87868 87801 Pro4220Leu-p.Pro4220His
239 USA 12925 T C 87867 87812 Pro4220Pro
240 USA 12926 A 87867 87849
241 USA 12927 A 87866 87849
242 USA 12928 A G 87866 87849 Lys4221Lys
243 USA 12929 G A 87865 87848 Gly4222Ser
244 USA 12930 G 87864 87848
245 USA 12931 T 87864 87843
246 USA 12932 C T 87864 87820 Pro4223Ser
247 USA 12933 C T,A 87864 87832 Pro4223Leu-p.Pro4223His
248 USA 12934 T A 87864 87837 Pro4223Pro
249 USA 12935 A 87863 87840
250 USA 12936 A 87863 87841
251 USA 12937 A G 87863 87841 Lys4224Lys
252 USA 12938 G 87863 87846
253 USA 12939 T 87861 87838
254 USA 12940 G A 87860 87829 Val4225Val
255 USA 12941 A 87860 87837
256 USA 12942 A G 87860 87832 Lys4226Arg
257 USA 12943 G A 87860 87846 Lys4226Lys
258 USA 12944 T 87860 87845
259 USA 12945 A G 87860 87843 Tyr4227Cys
260 USA 12946 T C 87860 87839 Tyr4227Tyr
261 USA 12947 T 87860 87836
262 USA 12948 T 87860 87838
263 USA 12949 A 87859 87836
264 USA 12950 T 87859 87839
265 USA 12951 A 87859 87840
266 USA 12952 C T 87858 87824 Tyr4229Tyr
267 USA 12953 T 87850 87809
268 USA 12954 T 87850 87817
269 USA 12955 T C 87851 87813 Phe4230Phe
270 USA 12956 A 87851 87816
271 USA 12957 T 87851 87818
272 USA 12958 T A 87851 87817 Ile4231Ile
273 USA 12959 A 87851 87818
274 USA 12960 A G 87850 87816 Lys4232Arg
275 USA 12961 A 87850 87816
276 USA 12962 G A,T 87850 87815 Gly4233*-p.Gly4233Arg
277 USA 12963 G 87848 87817
278 USA 12964 A G,C 87847 87791 Gly4233Gly-p.Gly4233Gly
279 USA 12965 T C 87847 87818 Leu4234Leu
280 USA 12966 T C 87847 87817 Leu4234Ser
281 USA 12967 A G 87847 87816 Leu4234Leu
282 USA 12968 A 87847 87816
283 USA 12969 A 87847 87818
284 USA 12970 C T 87846 87716 Asn4235Asn
285 USA 12971 A 87846 87815
286 USA 12972 A 87845 87818
287 USA 12973 C T 87844 87808 Asn4236Asn
288 USA 12974 C T,A 87843 87809 Leu4237Ile-p.Leu4237Leu
289 USA 12975 T 87843 87824
290 USA 12976 A 87843 87833
291 USA 12977 A 87843 87832
292 USA 12978 A 87843 87831
293 USA 12979 T C 87843 87824 Asn4238Asn
294 USA 12980 A 87843 87831
295 USA 12981 G T 87843 87832 Arg4239Ile
296 USA 12982 A G 87841 87829 Arg4239Arg
297 USA 12983 G T 87841 87829 Gly4240Cys
298 USA 12984 G 87840 87831
299 USA 12985 T 87836 87828
300 USA 12986 A G 87834 87811 Met4241Val
301 USA 12987 T C 87833 87825 Met4241Thr
302 USA 12988 G T,A 87833 87777 Met4241Ile-p.Met4241Ile
303 USA 12989 G A 87833 87826 Val4242Ile
304 USA 12990 T 87832 87828
305 USA 12991 A 87832 87822
306 USA 12992 C T 87832 87828 Leu4243Phe
307 USA 12993 T 87830 87823
308 USA 12994 T C,A 87829 87817 Leu4243Leu-p.Leu4243Leu
309 USA 12995 G 87829 87824
310 USA 12996 G 87829 87825
311 USA 12997 T 87829 87824
312 USA 12998 A G 87825 87813 Ser4245Gly
313 USA 12999 G T,A 87825 87814 Ser4245Ile-p.Ser4245Asn
314 USA 13000 T C 87825 87812 Ser4245Ser
315 USA 13001 T C 87825 87817 Leu4246Leu
316 USA 13002 T 87825 87817
317 USA 13003 A G 87825 87815 Leu4246Leu
318 USA 13004 G A 87825 87810 Ala4247Thr
319 USA 13005 C T 87825 87812 Ala4247Val
320 USA 13006 T C,A 87824 87790 Ala4247Ala-p.Ala4247Ala
321 USA 13007 G A 87824 87814 Ala4248Thr
322 USA 13008 C T 87824 87813 Ala4248Val
323 USA 13009 C T 87824 87814 Ala4248Ala
324 USA 13010 A 87824 87820
325 USA 13011 C T 87824 87773 Thr4249Ile
326 USA 13012 A T 87823 87820 Thr4249Thr
327 USA 13013 G T 87822 87818 Val4250Leu
328 USA 13014 T 87822 87822
329 USA 13015 A G 87822 87820 Val4250Val
330 USA 13016 C 87822 87821
331 USA 13017 G 87820 87816
332 USA 13018 T C 87819 87806 Arg4251Arg
333 USA 13019 C T 87819 87578 Leu4252Leu
334 USA 13020 T 87819 87819
335 USA 13021 A 87819 87819
336 USA 13022 C 87818 87816
337 USA 13023 A 87817 87817
338 USA 13024 A 87816 87816