National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 1         1                          
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                             1        
I   6                                      
K   21                                      
L   45         2       1                    
M   6                                      
N   21                     1                
P   18                                      
Q   12                                      
R   18                                      
S   15                             1        
T   36             1                        
V   18                                      
W   3                                      
Y   15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Turkey 12686 A 489 489
1 Turkey 12687 A 489 489
2 Turkey 12688 T 489 489
3 Turkey 12689 A 489 489
4 Turkey 12690 A 489 489
5 Turkey 12691 T 489 489
6 Turkey 12692 G 489 489
7 Turkey 12693 A 489 489
8 Turkey 12694 G 489 489
9 Turkey 12695 C T 489 488 Leu4144Phe
10 Turkey 12696 T 489 489
11 Turkey 12697 T 489 489
12 Turkey 12698 A 489 489
13 Turkey 12699 G 489 489
14 Turkey 12700 T 489 489
15 Turkey 12701 C 489 489
16 Turkey 12702 C 489 489
17 Turkey 12703 T 489 489
18 Turkey 12704 G 489 489
19 Turkey 12705 T 489 489
20 Turkey 12706 T 489 489
21 Turkey 12707 G 489 489
22 Turkey 12708 C 489 489
23 Turkey 12709 A 490 490
24 Turkey 12710 C 490 490
25 Turkey 12711 T 490 490
26 Turkey 12712 A 490 490
27 Turkey 12713 C 490 490
28 Turkey 12714 G 490 490
29 Turkey 12715 A 490 490
30 Turkey 12716 C 490 490
31 Turkey 12717 A 490 490
32 Turkey 12718 G 490 490
33 Turkey 12719 A 490 490
34 Turkey 12720 T 490 490
35 Turkey 12721 G 490 490
36 Turkey 12722 T 490 490
37 Turkey 12723 C 490 490
38 Turkey 12724 T 490 490
39 Turkey 12725 T 490 490
40 Turkey 12726 G 490 490
41 Turkey 12727 T 490 490
42 Turkey 12728 G 490 490
43 Turkey 12729 C 490 490
44 Turkey 12730 T 490 490
45 Turkey 12731 G 490 490
46 Turkey 12732 C 490 490
47 Turkey 12733 C 490 490
48 Turkey 12734 G 490 490
49 Turkey 12735 G 490 490
50 Turkey 12736 T 490 490
51 Turkey 12737 A 490 490
52 Turkey 12738 C 490 490
53 Turkey 12739 T 490 490
54 Turkey 12740 A 490 490
55 Turkey 12741 C T 490 488 Thr4159Ile
56 Turkey 12742 A 490 490
57 Turkey 12743 C 490 490
58 Turkey 12744 A 490 490
59 Turkey 12745 A 490 490
60 Turkey 12746 A 490 490
61 Turkey 12747 C 490 490
62 Turkey 12748 T 490 490
63 Turkey 12749 G 490 490
64 Turkey 12750 C G 490 489 Ala4162Gly
65 Turkey 12751 T 490 490
66 Turkey 12752 T 490 490
67 Turkey 12753 G 490 490
68 Turkey 12754 C 490 490
69 Turkey 12755 A 490 490
70 Turkey 12756 C 490 490
71 Turkey 12757 T 490 490
72 Turkey 12758 G 490 490
73 Turkey 12759 A 490 490
74 Turkey 12760 T 490 490
75 Turkey 12761 G 490 490
76 Turkey 12762 A 490 490
77 Turkey 12763 C 490 490
78 Turkey 12764 A 490 490
79 Turkey 12765 A 490 490
80 Turkey 12766 T 490 490
81 Turkey 12767 G 490 490
82 Turkey 12768 C 490 490
83 Turkey 12769 G A 490 489 Ala4168Ala
84 Turkey 12770 T 490 490
85 Turkey 12771 T 490 490
86 Turkey 12772 A 490 490
87 Turkey 12773 G 490 490
88 Turkey 12774 C 490 490
89 Turkey 12775 T 490 490
90 Turkey 12776 T 490 490
91 Turkey 12777 A 490 490
92 Turkey 12778 C 490 490
93 Turkey 12779 T 490 490
94 Turkey 12780 A 490 490
95 Turkey 12781 C T 490 488 Tyr4172Tyr
96 Turkey 12782 A 490 490
97 Turkey 12783 A 490 490
98 Turkey 12784 C 490 490
99 Turkey 12785 A 490 490
100 Turkey 12786 C 490 490
101 Turkey 12787 A 490 490
102 Turkey 12788 A 490 490
103 Turkey 12789 C 490 490
104 Turkey 12790 A 490 490
105 Turkey 12791 A 490 490
106 Turkey 12792 A 490 490
107 Turkey 12793 G 490 490
108 Turkey 12794 G 490 490
109 Turkey 12795 G 490 490
110 Turkey 12796 A 490 490
111 Turkey 12797 G 490 490
112 Turkey 12798 G 490 490
113 Turkey 12799 T 490 490
114 Turkey 12800 A 490 490
115 Turkey 12801 G 490 490
116 Turkey 12802 G 490 490
117 Turkey 12803 T 490 490
118 Turkey 12804 T 490 490
119 Turkey 12805 T 490 490
120 Turkey 12806 G 490 490
121 Turkey 12807 T 490 490
122 Turkey 12808 A 490 490
123 Turkey 12809 C T 490 413 Leu4182Phe
124 Turkey 12810 T 490 489
125 Turkey 12811 T 489 488
126 Turkey 12812 G 489 488
127 Turkey 12813 C 489 488
128 Turkey 12814 A 489 488
129 Turkey 12815 C 489 488
130 Turkey 12816 T 489 489
131 Turkey 12817 G 489 489
132 Turkey 12818 T 489 489
133 Turkey 12819 T 489 489
134 Turkey 12820 A 489 489
135 Turkey 12821 T 489 489
136 Turkey 12822 C 489 489
137 Turkey 12823 C T 489 473 Ser4186Ser
138 Turkey 12824 G 489 489
139 Turkey 12825 A 489 489
140 Turkey 12826 T 489 489
141 Turkey 12827 T 489 489
142 Turkey 12828 T 489 489
143 Turkey 12829 A 489 489
144 Turkey 12830 C 489 489
145 Turkey 12831 A 489 489
146 Turkey 12832 G 489 489
147 Turkey 12833 G 489 489
148 Turkey 12834 A 489 489
149 Turkey 12835 T 489 488
150 Turkey 12836 T 489 488
151 Turkey 12837 T 489 488
152 Turkey 12838 G 489 488
153 Turkey 12839 A 489 488
154 Turkey 12840 A 489 488
155 Turkey 12841 A 489 488
156 Turkey 12842 T 489 488
157 Turkey 12843 G 489 488
158 Turkey 12844 G 489 488
159 Turkey 12845 G 489 488
160 Turkey 12846 C 489 488
161 Turkey 12847 T 489 488
162 Turkey 12848 A 489 488
163 Turkey 12849 G 489 488
164 Turkey 12850 A 489 488
165 Turkey 12851 T 489 488
166 Turkey 12852 T 489 488
167 Turkey 12853 C 489 488
168 Turkey 12854 C 489 488
169 Turkey 12855 C 489 488
170 Turkey 12856 T 489 488
171 Turkey 12857 A 489 488
172 Turkey 12858 A 489 488
173 Turkey 12859 G 489 488
174 Turkey 12860 A 489 488
175 Turkey 12861 G 489 488
176 Turkey 12862 T 489 488
177 Turkey 12863 G 489 488
178 Turkey 12864 A 489 489
179 Turkey 12865 T 489 489
180 Turkey 12866 G 489 489
181 Turkey 12867 G 489 489
182 Turkey 12868 A 489 489
183 Turkey 12869 A 489 489
184 Turkey 12870 C 489 489
185 Turkey 12871 T 489 489
186 Turkey 12872 G A 489 488 Gly4203Ser
187 Turkey 12873 G 489 489
188 Turkey 12874 T 489 489
189 Turkey 12875 A 489 489
190 Turkey 12876 C 489 489
191 Turkey 12877 T 489 489
192 Turkey 12878 A 489 489
193 Turkey 12879 T 489 489
194 Turkey 12880 C 489 489
195 Turkey 12881 T 489 489
196 Turkey 12882 A 489 489
197 Turkey 12883 T 489 489
198 Turkey 12884 A 489 489
199 Turkey 12885 C 489 489
200 Turkey 12886 A 489 489
201 Turkey 12887 G 489 489
202 Turkey 12888 A 489 489
203 Turkey 12889 A 489 489
204 Turkey 12890 C 489 489
205 Turkey 12891 T 489 489
206 Turkey 12892 G 489 489
207 Turkey 12893 G 489 488
208 Turkey 12894 A 489 489
209 Turkey 12895 A 489 489
210 Turkey 12896 C 489 489
211 Turkey 12897 C 489 489
212 Turkey 12898 A 489 489
213 Turkey 12899 C 489 489
214 Turkey 12900 C 489 489
215 Turkey 12901 T 489 489
216 Turkey 12902 T 489 489
217 Turkey 12903 G 489 489
218 Turkey 12904 T 489 489
219 Turkey 12905 A 489 489
220 Turkey 12906 G 489 489
221 Turkey 12907 G 489 489
222 Turkey 12908 T 489 489
223 Turkey 12909 T 489 489
224 Turkey 12910 T 489 489
225 Turkey 12911 G 489 489
226 Turkey 12912 T 489 489
227 Turkey 12913 T 489 489
228 Turkey 12914 A 489 489
229 Turkey 12915 C 489 489
230 Turkey 12916 A 489 489
231 Turkey 12917 G 489 489
232 Turkey 12918 A 489 489
233 Turkey 12919 C 489 489
234 Turkey 12920 A 489 489
235 Turkey 12921 C 489 489
236 Turkey 12922 A 489 489
237 Turkey 12923 C 489 489
238 Turkey 12924 C 489 489
239 Turkey 12925 T 489 489
240 Turkey 12926 A 489 489
241 Turkey 12927 A 489 489
242 Turkey 12928 A 489 489
243 Turkey 12929 G 489 489
244 Turkey 12930 G 489 489
245 Turkey 12931 T 489 489
246 Turkey 12932 C 489 489
247 Turkey 12933 C 489 489
248 Turkey 12934 T 489 489
249 Turkey 12935 A 489 489
250 Turkey 12936 A 489 489
251 Turkey 12937 A 489 489
252 Turkey 12938 G 489 489
253 Turkey 12939 T 489 489
254 Turkey 12940 G 489 489
255 Turkey 12941 A 489 489
256 Turkey 12942 A 489 489
257 Turkey 12943 G 489 489
258 Turkey 12944 T 489 489
259 Turkey 12945 A 489 489
260 Turkey 12946 T 489 489
261 Turkey 12947 T 489 489
262 Turkey 12948 T 489 489
263 Turkey 12949 A 489 489
264 Turkey 12950 T 489 489
265 Turkey 12951 A 489 489
266 Turkey 12952 C 489 489
267 Turkey 12953 T 489 488
268 Turkey 12954 T 489 488
269 Turkey 12955 T 489 488
270 Turkey 12956 A 489 488
271 Turkey 12957 T 489 488
272 Turkey 12958 T 489 488
273 Turkey 12959 A 489 488
274 Turkey 12960 A 489 488
275 Turkey 12961 A 489 488
276 Turkey 12962 G 489 488
277 Turkey 12963 G 489 488
278 Turkey 12964 A 489 488
279 Turkey 12965 T 489 488
280 Turkey 12966 T 489 488
281 Turkey 12967 A 489 488
282 Turkey 12968 A 489 488
283 Turkey 12969 A 489 488
284 Turkey 12970 C T 489 485 Asn4235Asn
285 Turkey 12971 A 489 488
286 Turkey 12972 A 489 488
287 Turkey 12973 C 489 488
288 Turkey 12974 C 489 488
289 Turkey 12975 T 489 488
290 Turkey 12976 A 489 488
291 Turkey 12977 A 489 488
292 Turkey 12978 A 489 488
293 Turkey 12979 T 489 488
294 Turkey 12980 A 489 488
295 Turkey 12981 G 489 488
296 Turkey 12982 A 489 488
297 Turkey 12983 G 489 488
298 Turkey 12984 G 489 487
299 Turkey 12985 T 489 487
300 Turkey 12986 A 489 488
301 Turkey 12987 T 489 488
302 Turkey 12988 G 489 488
303 Turkey 12989 G 489 488
304 Turkey 12990 T 489 488
305 Turkey 12991 A 489 488
306 Turkey 12992 C 489 488
307 Turkey 12993 T 489 488
308 Turkey 12994 T 489 489
309 Turkey 12995 G 489 489
310 Turkey 12996 G 489 489
311 Turkey 12997 T 489 489
312 Turkey 12998 A 489 489
313 Turkey 12999 G 489 489
314 Turkey 13000 T 489 489
315 Turkey 13001 T 489 489
316 Turkey 13002 T 489 489
317 Turkey 13003 A 489 489
318 Turkey 13004 G 489 489
319 Turkey 13005 C 489 489
320 Turkey 13006 T 489 489
321 Turkey 13007 G 489 489
322 Turkey 13008 C 489 489
323 Turkey 13009 C 489 489
324 Turkey 13010 A 488 488
325 Turkey 13011 C 487 487
326 Turkey 13012 A 487 487
327 Turkey 13013 G 487 487
328 Turkey 13014 T 487 487
329 Turkey 13015 A 487 487
330 Turkey 13016 C 487 487
331 Turkey 13017 G 487 487
332 Turkey 13018 T 487 487
333 Turkey 13019 C T 487 486 Leu4252Leu
334 Turkey 13020 T 487 487
335 Turkey 13021 A 487 487
336 Turkey 13022 C 487 487
337 Turkey 13023 A 487 487
338 Turkey 13024 A 487 487