National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9   1                                  
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                 1    
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36             1                 1      
V   18           1                          
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Taiwan 12686 A 150 150
1 Taiwan 12687 A 150 150
2 Taiwan 12688 T 150 150
3 Taiwan 12689 A 150 150
4 Taiwan 12690 A 150 150
5 Taiwan 12691 T 150 150
6 Taiwan 12692 G 150 150
7 Taiwan 12693 A 150 150
8 Taiwan 12694 G 150 150
9 Taiwan 12695 C 150 150
10 Taiwan 12696 T 150 150
11 Taiwan 12697 T 150 150
12 Taiwan 12698 A 150 150
13 Taiwan 12699 G 150 150
14 Taiwan 12700 T 150 150
15 Taiwan 12701 C 150 150
16 Taiwan 12702 C 150 150
17 Taiwan 12703 T 150 150
18 Taiwan 12704 G 150 150
19 Taiwan 12705 T 150 150
20 Taiwan 12706 T 150 150
21 Taiwan 12707 G 150 150
22 Taiwan 12708 C 150 150
23 Taiwan 12709 A 150 150
24 Taiwan 12710 C 150 150
25 Taiwan 12711 T 150 150
26 Taiwan 12712 A 150 150
27 Taiwan 12713 C 150 150
28 Taiwan 12714 G 150 150
29 Taiwan 12715 A 150 150
30 Taiwan 12716 C 150 150
31 Taiwan 12717 A 150 150
32 Taiwan 12718 G 150 150
33 Taiwan 12719 A 150 150
34 Taiwan 12720 T 150 150
35 Taiwan 12721 G 150 150
36 Taiwan 12722 T 150 150
37 Taiwan 12723 C 150 150
38 Taiwan 12724 T 150 150
39 Taiwan 12725 T 150 150
40 Taiwan 12726 G 150 150
41 Taiwan 12727 T 150 150
42 Taiwan 12728 G 150 150
43 Taiwan 12729 C 150 150
44 Taiwan 12730 T 150 150
45 Taiwan 12731 G 150 150
46 Taiwan 12732 C 150 150
47 Taiwan 12733 C 150 150
48 Taiwan 12734 G 150 150
49 Taiwan 12735 G 150 150
50 Taiwan 12736 T 150 150
51 Taiwan 12737 A 150 150
52 Taiwan 12738 C 150 150
53 Taiwan 12739 T 150 150
54 Taiwan 12740 A 150 150
55 Taiwan 12741 C 150 150
56 Taiwan 12742 A 150 150
57 Taiwan 12743 C 150 150
58 Taiwan 12744 A 150 150
59 Taiwan 12745 A 150 150
60 Taiwan 12746 A 150 150
61 Taiwan 12747 C T 150 149 Thr4161Ile
62 Taiwan 12748 T 150 150
63 Taiwan 12749 G 150 150
64 Taiwan 12750 C 150 150
65 Taiwan 12751 T 150 150
66 Taiwan 12752 T 150 150
67 Taiwan 12753 G 150 150
68 Taiwan 12754 C T 150 148 Cys4163Cys
69 Taiwan 12755 A 150 150
70 Taiwan 12756 C 150 150
71 Taiwan 12757 T 150 150
72 Taiwan 12758 G 150 150
73 Taiwan 12759 A 150 150
74 Taiwan 12760 T 150 150
75 Taiwan 12761 G 150 150
76 Taiwan 12762 A 150 150
77 Taiwan 12763 C 150 150
78 Taiwan 12764 A 150 150
79 Taiwan 12765 A 150 150
80 Taiwan 12766 T 150 150
81 Taiwan 12767 G 150 150
82 Taiwan 12768 C 150 150
83 Taiwan 12769 G 150 150
84 Taiwan 12770 T 150 150
85 Taiwan 12771 T 150 150
86 Taiwan 12772 A 150 150
87 Taiwan 12773 G 150 150
88 Taiwan 12774 C 150 150
89 Taiwan 12775 T 150 150
90 Taiwan 12776 T 150 150
91 Taiwan 12777 A 150 150
92 Taiwan 12778 C 150 150
93 Taiwan 12779 T 150 150
94 Taiwan 12780 A 150 150
95 Taiwan 12781 C 150 150
96 Taiwan 12782 A 150 150
97 Taiwan 12783 A 150 150
98 Taiwan 12784 C 150 150
99 Taiwan 12785 A 150 150
100 Taiwan 12786 C 150 150
101 Taiwan 12787 A G 150 149 Thr4174Thr
102 Taiwan 12788 A 150 150
103 Taiwan 12789 C 150 150
104 Taiwan 12790 A 150 150
105 Taiwan 12791 A 150 150
106 Taiwan 12792 A 150 150
107 Taiwan 12793 G 150 150
108 Taiwan 12794 G 150 150
109 Taiwan 12795 G 150 150
110 Taiwan 12796 A 150 150
111 Taiwan 12797 G 150 150
112 Taiwan 12798 G 150 150
113 Taiwan 12799 T 150 150
114 Taiwan 12800 A 150 150
115 Taiwan 12801 G 150 150
116 Taiwan 12802 G 150 150
117 Taiwan 12803 T 150 150
118 Taiwan 12804 T 150 150
119 Taiwan 12805 T 150 150
120 Taiwan 12806 G 150 150
121 Taiwan 12807 T 150 150
122 Taiwan 12808 A 150 150
123 Taiwan 12809 C 150 150
124 Taiwan 12810 T 150 150
125 Taiwan 12811 T 150 150
126 Taiwan 12812 G 150 150
127 Taiwan 12813 C 150 150
128 Taiwan 12814 A 150 150
129 Taiwan 12815 C 150 150
130 Taiwan 12816 T 150 150
131 Taiwan 12817 G 150 150
132 Taiwan 12818 T 150 150
133 Taiwan 12819 T 150 150
134 Taiwan 12820 A 150 150
135 Taiwan 12821 T 150 150
136 Taiwan 12822 C 150 150
137 Taiwan 12823 C 150 150
138 Taiwan 12824 G 150 150
139 Taiwan 12825 A 150 150
140 Taiwan 12826 T 150 150
141 Taiwan 12827 T 150 150
142 Taiwan 12828 T 150 150
143 Taiwan 12829 A 150 150
144 Taiwan 12830 C 150 150
145 Taiwan 12831 A 150 150
146 Taiwan 12832 G 150 150
147 Taiwan 12833 G 150 150
148 Taiwan 12834 A 150 150
149 Taiwan 12835 T 150 150
150 Taiwan 12836 T 150 150
151 Taiwan 12837 T 150 150
152 Taiwan 12838 G 150 150
153 Taiwan 12839 A 150 150
154 Taiwan 12840 A 150 150
155 Taiwan 12841 A 150 150
156 Taiwan 12842 T 150 150
157 Taiwan 12843 G 150 150
158 Taiwan 12844 G 150 150
159 Taiwan 12845 G 150 150
160 Taiwan 12846 C 150 150
161 Taiwan 12847 T 150 150
162 Taiwan 12848 A 150 150
163 Taiwan 12849 G 150 150
164 Taiwan 12850 A 150 150
165 Taiwan 12851 T 150 150
166 Taiwan 12852 T 150 150
167 Taiwan 12853 C 150 150
168 Taiwan 12854 C 150 150
169 Taiwan 12855 C 150 150
170 Taiwan 12856 T 150 150
171 Taiwan 12857 A 150 150
172 Taiwan 12858 A 150 150
173 Taiwan 12859 G 150 150
174 Taiwan 12860 A 150 150
175 Taiwan 12861 G 150 150
176 Taiwan 12862 T 150 150
177 Taiwan 12863 G 150 150
178 Taiwan 12864 A 150 150
179 Taiwan 12865 T 150 150
180 Taiwan 12866 G 150 150
181 Taiwan 12867 G 150 150
182 Taiwan 12868 A 150 150
183 Taiwan 12869 A 150 150
184 Taiwan 12870 C 150 150
185 Taiwan 12871 T 150 150
186 Taiwan 12872 G 150 150
187 Taiwan 12873 G 150 150
188 Taiwan 12874 T 150 150
189 Taiwan 12875 A 150 150
190 Taiwan 12876 C 150 150
191 Taiwan 12877 T 150 150
192 Taiwan 12878 A G 150 149 Ile4205Val
193 Taiwan 12879 T 150 150
194 Taiwan 12880 C 150 150
195 Taiwan 12881 T 150 150
196 Taiwan 12882 A 150 150
197 Taiwan 12883 T 150 150
198 Taiwan 12884 A 150 150
199 Taiwan 12885 C 150 150
200 Taiwan 12886 A 150 150
201 Taiwan 12887 G 150 150
202 Taiwan 12888 A 150 150
203 Taiwan 12889 A 150 150
204 Taiwan 12890 C 150 150
205 Taiwan 12891 T 150 150
206 Taiwan 12892 G 150 150
207 Taiwan 12893 G 150 150
208 Taiwan 12894 A 150 150
209 Taiwan 12895 A 150 150
210 Taiwan 12896 C 150 150
211 Taiwan 12897 C 150 150
212 Taiwan 12898 A 150 150
213 Taiwan 12899 C 150 150
214 Taiwan 12900 C 150 150
215 Taiwan 12901 T 150 150
216 Taiwan 12902 T 150 150
217 Taiwan 12903 G 150 150
218 Taiwan 12904 T 150 150
219 Taiwan 12905 A 150 150
220 Taiwan 12906 G 150 150
221 Taiwan 12907 G 150 150
222 Taiwan 12908 T 150 150
223 Taiwan 12909 T 150 150
224 Taiwan 12910 T 150 150
225 Taiwan 12911 G 150 150
226 Taiwan 12912 T 150 150
227 Taiwan 12913 T 150 150
228 Taiwan 12914 A 150 150
229 Taiwan 12915 C 150 150
230 Taiwan 12916 A 150 150
231 Taiwan 12917 G 150 150
232 Taiwan 12918 A 150 150
233 Taiwan 12919 C 150 150
234 Taiwan 12920 A 150 150
235 Taiwan 12921 C 150 150
236 Taiwan 12922 A 150 150
237 Taiwan 12923 C 150 150
238 Taiwan 12924 C 150 150
239 Taiwan 12925 T 150 150
240 Taiwan 12926 A 150 150
241 Taiwan 12927 A 150 150
242 Taiwan 12928 A 150 150
243 Taiwan 12929 G 150 150
244 Taiwan 12930 G 150 150
245 Taiwan 12931 T 150 150
246 Taiwan 12932 C 150 150
247 Taiwan 12933 C 150 150
248 Taiwan 12934 T 150 150
249 Taiwan 12935 A 150 150
250 Taiwan 12936 A 150 150
251 Taiwan 12937 A 150 150
252 Taiwan 12938 G 150 150
253 Taiwan 12939 T G 150 149 Val4225Gly
254 Taiwan 12940 G 150 150
255 Taiwan 12941 A 150 150
256 Taiwan 12942 A 150 150
257 Taiwan 12943 G 150 150
258 Taiwan 12944 T 150 150
259 Taiwan 12945 A 150 150
260 Taiwan 12946 T 150 150
261 Taiwan 12947 T 150 150
262 Taiwan 12948 T 150 150
263 Taiwan 12949 A 150 150
264 Taiwan 12950 T 150 150
265 Taiwan 12951 A 150 150
266 Taiwan 12952 C 150 150
267 Taiwan 12953 T 150 150
268 Taiwan 12954 T 150 150
269 Taiwan 12955 T 150 150
270 Taiwan 12956 A 150 150
271 Taiwan 12957 T 150 150
272 Taiwan 12958 T 150 150
273 Taiwan 12959 A 150 150
274 Taiwan 12960 A 150 150
275 Taiwan 12961 A 150 150
276 Taiwan 12962 G 150 150
277 Taiwan 12963 G 150 150
278 Taiwan 12964 A 150 150
279 Taiwan 12965 T 150 150
280 Taiwan 12966 T 150 150
281 Taiwan 12967 A 150 150
282 Taiwan 12968 A 150 150
283 Taiwan 12969 A 150 150
284 Taiwan 12970 C 150 150
285 Taiwan 12971 A 150 150
286 Taiwan 12972 A 150 150
287 Taiwan 12973 C 150 150
288 Taiwan 12974 C 150 150
289 Taiwan 12975 T 150 150
290 Taiwan 12976 A 150 150
291 Taiwan 12977 A 150 150
292 Taiwan 12978 A 150 150
293 Taiwan 12979 T 150 150
294 Taiwan 12980 A 150 150
295 Taiwan 12981 G 150 150
296 Taiwan 12982 A 150 150
297 Taiwan 12983 G 150 150
298 Taiwan 12984 G 150 150
299 Taiwan 12985 T 150 150
300 Taiwan 12986 A 150 150
301 Taiwan 12987 T 150 150
302 Taiwan 12988 G 150 150
303 Taiwan 12989 G 150 150
304 Taiwan 12990 T 150 150
305 Taiwan 12991 A 150 150
306 Taiwan 12992 C 150 150
307 Taiwan 12993 T 150 150
308 Taiwan 12994 T 150 150
309 Taiwan 12995 G 150 150
310 Taiwan 12996 G 150 150
311 Taiwan 12997 T 150 150
312 Taiwan 12998 A 150 150
313 Taiwan 12999 G 150 150
314 Taiwan 13000 T 150 150
315 Taiwan 13001 T 150 150
316 Taiwan 13002 T 150 150
317 Taiwan 13003 A 150 150
318 Taiwan 13004 G 150 150
319 Taiwan 13005 C 150 150
320 Taiwan 13006 T 150 150
321 Taiwan 13007 G 150 150
322 Taiwan 13008 C 150 150
323 Taiwan 13009 C 150 150
324 Taiwan 13010 A 150 150
325 Taiwan 13011 C 150 150
326 Taiwan 13012 A 150 150
327 Taiwan 13013 G 150 150
328 Taiwan 13014 T 150 150
329 Taiwan 13015 A 150 150
330 Taiwan 13016 C 150 150
331 Taiwan 13017 G 150 150
332 Taiwan 13018 T 150 150
333 Taiwan 13019 C 150 150
334 Taiwan 13020 T 150 150
335 Taiwan 13021 A 150 150
336 Taiwan 13022 C 150 150
337 Taiwan 13023 A 150 150
338 Taiwan 13024 A 150 150