National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   339                                        
?                                            
A   30 6                               2 2    
C   9   1                                    
D   18     2     2           1                
E   9                                        
F   12         1                              
G   27           4                 1          
H                                            
I   6               1                        
K   21                 2     1     1          
L   45         1     1   7           2        
M   6               1                        
N   21                       4                
P   18                   1     3     1 1      
Q   12             1             1            
R   18                             2          
S   15         1                     1        
T   36 4             6       1         3      
V   18                                        
W   3                                        
Y   15                                       1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Switzerland 12686 A 8048 8048
1 Switzerland 12687 A 8048 8048
2 Switzerland 12688 T 8048 8048
3 Switzerland 12689 A 8048 8048
4 Switzerland 12690 A 8048 8048
5 Switzerland 12691 T 8048 8048
6 Switzerland 12692 G 8048 8047
7 Switzerland 12693 A 8048 8047
8 Switzerland 12694 G 8048 8048
9 Switzerland 12695 C 8048 8045
10 Switzerland 12696 T 8048 8048
11 Switzerland 12697 T 8048 8048
12 Switzerland 12698 A 8048 8045
13 Switzerland 12699 G 8048 8047
14 Switzerland 12700 T 8048 8047
15 Switzerland 12701 C 8048 8047
16 Switzerland 12702 C 8048 8047
17 Switzerland 12703 T C 8048 8046 Pro4146Pro
18 Switzerland 12704 G 8048 8047
19 Switzerland 12705 T 8048 8047
20 Switzerland 12706 T 8048 8046
21 Switzerland 12707 G 8048 8048
22 Switzerland 12708 C 8048 8048
23 Switzerland 12709 A 8048 8047
24 Switzerland 12710 C A 8049 8044 Leu4149Ile
25 Switzerland 12711 T 8072 8072
26 Switzerland 12712 A G 8072 8070 Leu4149Leu
27 Switzerland 12713 C 8072 8069
28 Switzerland 12714 G 8072 8071
29 Switzerland 12715 A G 8072 8071 Arg4150Arg
30 Switzerland 12716 C 8073 8073
31 Switzerland 12717 A 8073 8073
32 Switzerland 12718 G 8073 8072
33 Switzerland 12719 A 8073 8072
34 Switzerland 12720 T 8073 8073
35 Switzerland 12721 G 8073 8072
36 Switzerland 12722 T 8073 8073
37 Switzerland 12723 C T 8073 8064 Ser4153Phe
38 Switzerland 12724 T 8073 8073
39 Switzerland 12725 T 8073 8071
40 Switzerland 12726 G 8073 8073
41 Switzerland 12727 T 8073 8073
42 Switzerland 12728 G 8073 8073
43 Switzerland 12729 C 8073 8073
44 Switzerland 12730 T 8073 8073
45 Switzerland 12731 G A 8073 8072 Ala4156Thr
46 Switzerland 12732 C 8073 8073
47 Switzerland 12733 C A,T 8073 8066 Ala4156Ala-p.Ala4156Ala
48 Switzerland 12734 G 8073 8073
49 Switzerland 12735 G 8073 8072
50 Switzerland 12736 T 8073 8073
51 Switzerland 12737 A G 8073 8068 Thr4158Ala
52 Switzerland 12738 C 8073 8070
53 Switzerland 12739 T C 8073 8064 Thr4158Thr
54 Switzerland 12740 A 8073 8073
55 Switzerland 12741 C T 8073 8057 Thr4159Ile
56 Switzerland 12742 A 8073 8073
57 Switzerland 12743 C 8073 8073
58 Switzerland 12744 A 8073 8072
59 Switzerland 12745 A 8073 8072
60 Switzerland 12746 A 8073 8073
61 Switzerland 12747 C T,A 8073 8068 Thr4161Ile-p.Thr4161Asn
62 Switzerland 12748 T 8073 8072
63 Switzerland 12749 G 8073 8072
64 Switzerland 12750 C T 8073 8070 Ala4162Val
65 Switzerland 12751 T A 8073 8047 Ala4162Ala
66 Switzerland 12752 T 8073 8073
67 Switzerland 12753 G 8073 8073
68 Switzerland 12754 C T 8073 8067 Cys4163Cys
69 Switzerland 12755 A G 8073 8058 Thr4164Ala
70 Switzerland 12756 C T 8073 8071 Thr4164Ile
71 Switzerland 12757 T 8073 8073
72 Switzerland 12758 G 8073 8072
73 Switzerland 12759 A G 8073 7972 Asp4165Gly
74 Switzerland 12760 T 8073 8073
75 Switzerland 12761 G 8073 8072
76 Switzerland 12762 A 8073 8073
77 Switzerland 12763 C T 8073 8058 Asp4166Asp
78 Switzerland 12764 A 8073 8073
79 Switzerland 12765 A 8073 8073
80 Switzerland 12766 T 8073 8072
81 Switzerland 12767 G 8073 8072
82 Switzerland 12768 C 8073 8072
83 Switzerland 12769 G T,A 8073 8045 Ala4168Ala-p.Ala4168Ala
84 Switzerland 12770 T 8073 8073
85 Switzerland 12771 T 8073 8073
86 Switzerland 12772 A 8073 8073
87 Switzerland 12773 G 8073 8072
88 Switzerland 12774 C 8073 8073
89 Switzerland 12775 T 8073 8073
90 Switzerland 12776 T 8073 8073
91 Switzerland 12777 A 8073 8073
92 Switzerland 12778 C 8073 8073
93 Switzerland 12779 T 8073 8073
94 Switzerland 12780 A 8073 8073
95 Switzerland 12781 C T 8073 8071 Tyr4172Tyr
96 Switzerland 12782 A 8073 8073
97 Switzerland 12783 A 8073 8073
98 Switzerland 12784 C T 8073 8072 Asn4173Asn
99 Switzerland 12785 A 8073 8073
100 Switzerland 12786 C 8073 8070
101 Switzerland 12787 A 8073 8073
102 Switzerland 12788 A 8073 8073
103 Switzerland 12789 C T 8073 8000 Thr4175Ile
104 Switzerland 12790 A 8073 8070
105 Switzerland 12791 A 8073 8072
106 Switzerland 12792 A 8073 8073
107 Switzerland 12793 G T 8073 8070 Lys4176Asn
108 Switzerland 12794 G A 8073 8066 Gly4177Arg
109 Switzerland 12795 G 8073 8073
110 Switzerland 12796 A 8070 8070
111 Switzerland 12797 G 8069 8064
112 Switzerland 12798 G 8069 8069
113 Switzerland 12799 T 8069 8068
114 Switzerland 12800 A 8069 8068
115 Switzerland 12801 G 8069 8069
116 Switzerland 12802 G 8067 8067
117 Switzerland 12803 T 8026 8017
118 Switzerland 12804 T 8025 8022
119 Switzerland 12805 T 8024 8021
120 Switzerland 12806 G 8024 8019
121 Switzerland 12807 T 8024 8021
122 Switzerland 12808 A 8024 8021
123 Switzerland 12809 C T 8024 8004 Leu4182Phe
124 Switzerland 12810 T 8024 8021
125 Switzerland 12811 T 8024 8020
126 Switzerland 12812 G 8024 8020
127 Switzerland 12813 C 8023 8020
128 Switzerland 12814 A 8023 8019
129 Switzerland 12815 C T 8023 8018 Leu4184Leu
130 Switzerland 12816 T 8023 8020
131 Switzerland 12817 G T 8023 8016 Leu4184Leu
132 Switzerland 12818 T 8023 8019
133 Switzerland 12819 T 8023 8020
134 Switzerland 12820 A G 8023 8018 Leu4185Leu
135 Switzerland 12821 T 8023 8020
136 Switzerland 12822 C 8023 8019
137 Switzerland 12823 C T 8023 7994 Ser4186Ser
138 Switzerland 12824 G A 8023 8019 Asp4187Asn
139 Switzerland 12825 A G 8023 8013 Asp4187Gly
140 Switzerland 12826 T 8023 8020
141 Switzerland 12827 T 8023 8020
142 Switzerland 12828 T C 8023 8018 Leu4188Ser
143 Switzerland 12829 A G 8023 8019 Leu4188Leu
144 Switzerland 12830 C 8023 8019
145 Switzerland 12831 A 8023 8019
146 Switzerland 12832 G T,A 8023 8018 Gln4189His-p.Gln4189Gln
147 Switzerland 12833 G 8023 8020
148 Switzerland 12834 A 8023 8017
149 Switzerland 12835 T 8023 8020
150 Switzerland 12836 T C 8023 8019 Leu4191Leu
151 Switzerland 12837 T 8023 8020
152 Switzerland 12838 G 8023 8017
153 Switzerland 12839 A 8023 8020
154 Switzerland 12840 A 8023 8019
155 Switzerland 12841 A G 8023 8017 Lys4192Lys
156 Switzerland 12842 T 8023 8020
157 Switzerland 12843 G 8023 8021
158 Switzerland 12844 G 8023 8017
159 Switzerland 12845 G A 8023 8018 Ala4194Thr
160 Switzerland 12846 C T 8023 8019 Ala4194Val
161 Switzerland 12847 T 8023 8023
162 Switzerland 12848 A 8023 8023
163 Switzerland 12849 G 8023 8022
164 Switzerland 12850 A G 8023 8022 Arg4195Arg
165 Switzerland 12851 T 8023 8023
166 Switzerland 12852 T 8023 8021
167 Switzerland 12853 C T 8023 8020 Phe4196Phe
168 Switzerland 12854 C 8023 8021
169 Switzerland 12855 C 8023 8020
170 Switzerland 12856 T C 8023 8022 Pro4197Pro
171 Switzerland 12857 A 8023 8023
172 Switzerland 12858 A 8023 8023
173 Switzerland 12859 G 8023 8023
174 Switzerland 12860 A 8023 8023
175 Switzerland 12861 G 8023 8019
176 Switzerland 12862 T 8023 8022
177 Switzerland 12863 G 8023 8022
178 Switzerland 12864 A 8023 8022
179 Switzerland 12865 T 8023 8022
180 Switzerland 12866 G 8023 8022
181 Switzerland 12867 G 8023 8023
182 Switzerland 12868 A G 8023 8022 Gly4201Gly
183 Switzerland 12869 A 8023 8023
184 Switzerland 12870 C 8023 8023
185 Switzerland 12871 T 8023 8023
186 Switzerland 12872 G 8023 8023
187 Switzerland 12873 G 8023 8022
188 Switzerland 12874 T C 8023 8022 Gly4203Gly
189 Switzerland 12875 A G 8023 8020 Thr4204Ala
190 Switzerland 12876 C 8023 8021
191 Switzerland 12877 T 8023 8023
192 Switzerland 12878 A 8023 8020
193 Switzerland 12879 T 8023 8022
194 Switzerland 12880 C T 8023 7989 Ile4205Ile
195 Switzerland 12881 T 8023 8023
196 Switzerland 12882 A 8023 8023
197 Switzerland 12883 T 8023 8023
198 Switzerland 12884 A 8023 8023
199 Switzerland 12885 C T 8023 8014 Thr4207Ile
200 Switzerland 12886 A G 8023 8021 Thr4207Thr
201 Switzerland 12887 G 8023 8022
202 Switzerland 12888 A 8023 8023
203 Switzerland 12889 A 8023 8023
204 Switzerland 12890 C 8023 8022
205 Switzerland 12891 T 8023 8023
206 Switzerland 12892 G 8023 8023
207 Switzerland 12893 G 8023 8020
208 Switzerland 12894 A 8023 8023
209 Switzerland 12895 A 8023 8022
210 Switzerland 12896 C T,A 8023 8010 Pro4211Ser-p.Pro4211Thr
211 Switzerland 12897 C 8023 8022
212 Switzerland 12898 A C 8023 8022 Pro4211Pro
213 Switzerland 12899 C 8023 8020
214 Switzerland 12900 C 8023 8023
215 Switzerland 12901 T 8023 8023
216 Switzerland 12902 T 8023 8023
217 Switzerland 12903 G 8023 8018
218 Switzerland 12904 T 8023 8023
219 Switzerland 12905 A 8023 8021
220 Switzerland 12906 G 8023 8023
221 Switzerland 12907 G 8023 8020
222 Switzerland 12908 T 8023 8021
223 Switzerland 12909 T 8023 8023
224 Switzerland 12910 T 8023 8022
225 Switzerland 12911 G 8023 8023
226 Switzerland 12912 T 8023 8023
227 Switzerland 12913 T 8023 8021
228 Switzerland 12914 A 8023 8023
229 Switzerland 12915 C 8023 8022
230 Switzerland 12916 A G 8023 8021 Thr4217Thr
231 Switzerland 12917 G 8023 8022
232 Switzerland 12918 A 8023 8023
233 Switzerland 12919 C T 8023 8021 Asp4218Asp
234 Switzerland 12920 A G 8023 8021 Thr4219Ala
235 Switzerland 12921 C 8023 8022
236 Switzerland 12922 A 8023 8023
237 Switzerland 12923 C 8023 8023
238 Switzerland 12924 C T 8023 8015 Pro4220Leu
239 Switzerland 12925 T 8023 8022
240 Switzerland 12926 A 8023 8023
241 Switzerland 12927 A 8023 8022
242 Switzerland 12928 A 8023 8023
243 Switzerland 12929 G 8023 8019
244 Switzerland 12930 G 8023 8020
245 Switzerland 12931 T 8023 8023
246 Switzerland 12932 C 8023 8023
247 Switzerland 12933 C 8023 8022
248 Switzerland 12934 T 8023 8017
249 Switzerland 12935 A 8023 8019
250 Switzerland 12936 A G 8023 8022 Lys4224Arg
251 Switzerland 12937 A 8023 8022
252 Switzerland 12938 G 8023 8021
253 Switzerland 12939 T 8023 8023
254 Switzerland 12940 G 8023 8020
255 Switzerland 12941 A 8023 8023
256 Switzerland 12942 A 8023 8022
257 Switzerland 12943 G 8023 8023
258 Switzerland 12944 T 8023 8022
259 Switzerland 12945 A 8023 8023
260 Switzerland 12946 T 8023 8023
261 Switzerland 12947 T 8023 8023
262 Switzerland 12948 T 8023 8023
263 Switzerland 12949 A G 8023 8019 Leu4228Leu
264 Switzerland 12950 T 8023 8022
265 Switzerland 12951 A 8023 8023
266 Switzerland 12952 C 8023 8021
267 Switzerland 12953 T 8023 8022
268 Switzerland 12954 T 8023 8020
269 Switzerland 12955 T 8023 8021
270 Switzerland 12956 A 8023 8021
271 Switzerland 12957 T 8023 8021
272 Switzerland 12958 T 8023 8022
273 Switzerland 12959 A 8023 8020
274 Switzerland 12960 A 8023 8022
275 Switzerland 12961 A G 8023 8021 Lys4232Lys
276 Switzerland 12962 G 8021 8020
277 Switzerland 12963 G 8021 8019
278 Switzerland 12964 A G,C 8021 8013 Gly4233Gly-p.Gly4233Gly
279 Switzerland 12965 T 8021 8020
280 Switzerland 12966 T 8021 8021
281 Switzerland 12967 A 8021 8021
282 Switzerland 12968 A 8021 8021
283 Switzerland 12969 A 8021 8021
284 Switzerland 12970 C T 8021 8002 Asn4235Asn
285 Switzerland 12971 A 8021 8020
286 Switzerland 12972 A 8021 8021
287 Switzerland 12973 C T 8021 8020 Asn4236Asn
288 Switzerland 12974 C 8021 8020
289 Switzerland 12975 T 8021 8020
290 Switzerland 12976 A 8021 8021
291 Switzerland 12977 A 8021 8021
292 Switzerland 12978 A 8021 8021
293 Switzerland 12979 T C 8021 8018 Asn4238Asn
294 Switzerland 12980 A 8021 8020
295 Switzerland 12981 G 8021 8019
296 Switzerland 12982 A 8021 8020
297 Switzerland 12983 G 8021 8021
298 Switzerland 12984 G 8021 8019
299 Switzerland 12985 T 8021 8021
300 Switzerland 12986 A 8021 8021
301 Switzerland 12987 T 8021 8021
302 Switzerland 12988 G T 8021 7801 Met4241Ile
303 Switzerland 12989 G 8021 8020
304 Switzerland 12990 T 8021 8021
305 Switzerland 12991 A 8021 8020
306 Switzerland 12992 C 8021 8020
307 Switzerland 12993 T 8021 8020
308 Switzerland 12994 T 8021 8019
309 Switzerland 12995 G 8021 8020
310 Switzerland 12996 G 8021 8019
311 Switzerland 12997 T 8021 8019
312 Switzerland 12998 A 8021 8020
313 Switzerland 12999 G 8021 8020
314 Switzerland 13000 T 8021 8018
315 Switzerland 13001 T 8021 8020
316 Switzerland 13002 T C 8021 8019 Leu4246Ser
317 Switzerland 13003 A 8021 8020
318 Switzerland 13004 G 8021 8019
319 Switzerland 13005 C 8021 8016
320 Switzerland 13006 T C 8021 8017 Ala4247Ala
321 Switzerland 13007 G 8021 8021
322 Switzerland 13008 C 8021 8021
323 Switzerland 13009 C 8021 8018
324 Switzerland 13010 A 8021 8021
325 Switzerland 13011 C T 8021 8017 Thr4249Ile
326 Switzerland 13012 A 8021 8021
327 Switzerland 13013 G 8021 8020
328 Switzerland 13014 T 8021 8021
329 Switzerland 13015 A 8021 8021
330 Switzerland 13016 C 8021 8021
331 Switzerland 13017 G 8021 8020
332 Switzerland 13018 T 8021 8021
333 Switzerland 13019 C 8021 7997
334 Switzerland 13020 T 8021 8021
335 Switzerland 13021 A 8021 8021
336 Switzerland 13022 C 8021 8021
337 Switzerland 13023 A 8021 8021
338 Switzerland 13024 A 8021 8021