National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   339                                        
?                                            
A   30 2                             1        
C   9                                        
D   18           1           1                
E   9                                        
F   12                                        
G   27                                        
H                                            
I   6                                        
K   21                                        
L   45         1         3                    
M   6               1                        
N   21                       1               1
P   18             1     1             1      
Q   12                                        
R   18                                        
S   15                               1       1
T   36               4 1               2      
V   18         1                              
W   3                                        
Y   15                                       2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Sweden 12686 A 1388 1388
1 Sweden 12687 A 1388 1388
2 Sweden 12688 T 1388 1388
3 Sweden 12689 A 1388 1388
4 Sweden 12690 A 1388 1388
5 Sweden 12691 T 1388 1388
6 Sweden 12692 G 1388 1388
7 Sweden 12693 A 1388 1388
8 Sweden 12694 G 1388 1388
9 Sweden 12695 C 1388 1388
10 Sweden 12696 T 1388 1388
11 Sweden 12697 T 1388 1388
12 Sweden 12698 A 1388 1388
13 Sweden 12699 G 1388 1388
14 Sweden 12700 T 1388 1388
15 Sweden 12701 C 1388 1388
16 Sweden 12702 C 1388 1388
17 Sweden 12703 T 1388 1388
18 Sweden 12704 G 1388 1388
19 Sweden 12705 T 1388 1388
20 Sweden 12706 T 1388 1388
21 Sweden 12707 G 1388 1388
22 Sweden 12708 C 1388 1388
23 Sweden 12709 A 1388 1388
24 Sweden 12710 C 1388 1388
25 Sweden 12711 T 1388 1388
26 Sweden 12712 A 1388 1388
27 Sweden 12713 C 1388 1388
28 Sweden 12714 G 1388 1388
29 Sweden 12715 A 1388 1388
30 Sweden 12716 C 1388 1388
31 Sweden 12717 A 1388 1388
32 Sweden 12718 G 1388 1388
33 Sweden 12719 A 1388 1388
34 Sweden 12720 T 1388 1388
35 Sweden 12721 G 1388 1388
36 Sweden 12722 T 1388 1388
37 Sweden 12723 C A 1388 1387 Ser4153Tyr
38 Sweden 12724 T 1388 1388
39 Sweden 12725 T 1388 1388
40 Sweden 12726 G 1388 1388
41 Sweden 12727 T 1388 1388
42 Sweden 12728 G 1388 1388
43 Sweden 12729 C 1388 1388
44 Sweden 12730 T 1388 1388
45 Sweden 12731 G 1388 1388
46 Sweden 12732 C 1388 1388
47 Sweden 12733 C 1388 1388
48 Sweden 12734 G 1388 1388
49 Sweden 12735 G 1388 1388
50 Sweden 12736 T 1388 1388
51 Sweden 12737 A 1388 1388
52 Sweden 12738 C 1388 1388
53 Sweden 12739 T 1388 1388
54 Sweden 12740 A 1388 1388
55 Sweden 12741 C 1388 1388
56 Sweden 12742 A 1388 1388
57 Sweden 12743 C 1388 1388
58 Sweden 12744 A 1388 1388
59 Sweden 12745 A 1388 1388
60 Sweden 12746 A 1388 1388
61 Sweden 12747 C 1388 1388
62 Sweden 12748 T 1388 1388
63 Sweden 12749 G 1388 1388
64 Sweden 12750 C 1388 1388
65 Sweden 12751 T 1388 1388
66 Sweden 12752 T 1388 1388
67 Sweden 12753 G 1388 1388
68 Sweden 12754 C 1388 1388
69 Sweden 12755 A 1388 1388
70 Sweden 12756 C 1388 1388
71 Sweden 12757 T C 1388 1387 Thr4164Thr
72 Sweden 12758 G 1388 1388
73 Sweden 12759 A G 1388 1384 Asp4165Gly
74 Sweden 12760 T 1388 1388
75 Sweden 12761 G 1388 1388
76 Sweden 12762 A 1388 1388
77 Sweden 12763 C 1388 1388
78 Sweden 12764 A 1388 1388
79 Sweden 12765 A 1388 1388
80 Sweden 12766 T 1388 1388
81 Sweden 12767 G 1388 1388
82 Sweden 12768 C 1388 1388
83 Sweden 12769 G A,T 1388 1381 Ala4168Ala-p.Ala4168Ala
84 Sweden 12770 T 1388 1388
85 Sweden 12771 T 1388 1388
86 Sweden 12772 A 1388 1388
87 Sweden 12773 G T 1388 1387 Ala4170Ser
88 Sweden 12774 C 1388 1388
89 Sweden 12775 T 1388 1388
90 Sweden 12776 T 1388 1388
91 Sweden 12777 A 1388 1388
92 Sweden 12778 C T 1388 1387 Tyr4171Tyr
93 Sweden 12779 T 1388 1388
94 Sweden 12780 A 1388 1388
95 Sweden 12781 C T 1388 1386 Tyr4172Tyr
96 Sweden 12782 A T 1388 1387 Asn4173Tyr
97 Sweden 12783 A 1388 1388
98 Sweden 12784 C 1388 1388
99 Sweden 12785 A 1388 1388
100 Sweden 12786 C A 1388 1387 Thr4174Lys
101 Sweden 12787 A 1388 1388
102 Sweden 12788 A 1388 1388
103 Sweden 12789 C T 1388 1387 Thr4175Ile
104 Sweden 12790 A G 1388 1369 Thr4175Thr
105 Sweden 12791 A 1388 1388
106 Sweden 12792 A 1388 1388
107 Sweden 12793 G 1388 1388
108 Sweden 12794 G 1388 1388
109 Sweden 12795 G 1388 1388
110 Sweden 12796 A 1388 1388
111 Sweden 12797 G 1388 1388
112 Sweden 12798 G 1388 1388
113 Sweden 12799 T 1388 1388
114 Sweden 12800 A 1388 1388
115 Sweden 12801 G 1388 1388
116 Sweden 12802 G 1388 1388
117 Sweden 12803 T 1388 1388
118 Sweden 12804 T 1388 1388
119 Sweden 12805 T 1388 1388
120 Sweden 12806 G 1388 1388
121 Sweden 12807 T 1388 1388
122 Sweden 12808 A 1388 1388
123 Sweden 12809 C T 1388 1387 Leu4182Phe
124 Sweden 12810 T 1388 1388
125 Sweden 12811 T 1388 1388
126 Sweden 12812 G 1388 1388
127 Sweden 12813 C 1388 1388
128 Sweden 12814 A 1388 1388
129 Sweden 12815 C 1388 1388
130 Sweden 12816 T 1388 1388
131 Sweden 12817 G 1388 1388
132 Sweden 12818 T 1388 1388
133 Sweden 12819 T 1388 1388
134 Sweden 12820 A 1388 1388
135 Sweden 12821 T 1388 1388
136 Sweden 12822 C 1388 1388
137 Sweden 12823 C T 1388 1386 Ser4186Ser
138 Sweden 12824 G A 1388 1387 Asp4187Asn
139 Sweden 12825 A 1388 1388
140 Sweden 12826 T 1388 1388
141 Sweden 12827 T 1388 1388
142 Sweden 12828 T 1388 1388
143 Sweden 12829 A 1388 1388
144 Sweden 12830 C 1388 1388
145 Sweden 12831 A 1388 1388
146 Sweden 12832 G 1388 1388
147 Sweden 12833 G 1388 1388
148 Sweden 12834 A 1388 1388
149 Sweden 12835 T 1388 1388
150 Sweden 12836 T C 1388 1386 Leu4191Leu
151 Sweden 12837 T 1388 1388
152 Sweden 12838 G 1388 1388
153 Sweden 12839 A 1388 1388
154 Sweden 12840 A 1388 1388
155 Sweden 12841 A 1388 1388
156 Sweden 12842 T 1388 1388
157 Sweden 12843 G 1388 1388
158 Sweden 12844 G 1388 1388
159 Sweden 12845 G 1388 1388
160 Sweden 12846 C 1388 1388
161 Sweden 12847 T 1388 1388
162 Sweden 12848 A 1388 1388
163 Sweden 12849 G 1388 1388
164 Sweden 12850 A 1388 1388
165 Sweden 12851 T 1388 1388
166 Sweden 12852 T 1388 1388
167 Sweden 12853 C 1388 1388
168 Sweden 12854 C 1388 1388
169 Sweden 12855 C 1388 1388
170 Sweden 12856 T 1388 1388
171 Sweden 12857 A 1388 1388
172 Sweden 12858 A 1388 1388
173 Sweden 12859 G 1388 1388
174 Sweden 12860 A 1388 1388
175 Sweden 12861 G 1388 1388
176 Sweden 12862 T 1388 1388
177 Sweden 12863 G 1388 1388
178 Sweden 12864 A 1388 1388
179 Sweden 12865 T 1388 1388
180 Sweden 12866 G 1388 1388
181 Sweden 12867 G 1388 1388
182 Sweden 12868 A 1388 1388
183 Sweden 12869 A 1388 1388
184 Sweden 12870 C T 1388 1387 Thr4202Ile
185 Sweden 12871 T 1388 1388
186 Sweden 12872 G 1388 1388
187 Sweden 12873 G 1388 1388
188 Sweden 12874 T 1388 1388
189 Sweden 12875 A 1388 1388
190 Sweden 12876 C 1388 1388
191 Sweden 12877 T 1388 1388
192 Sweden 12878 A 1388 1388
193 Sweden 12879 T 1388 1388
194 Sweden 12880 C 1388 1388
195 Sweden 12881 T 1388 1388
196 Sweden 12882 A 1388 1388
197 Sweden 12883 T 1388 1388
198 Sweden 12884 A 1388 1388
199 Sweden 12885 C T 1388 1387 Thr4207Ile
200 Sweden 12886 A 1388 1388
201 Sweden 12887 G 1388 1388
202 Sweden 12888 A 1388 1388
203 Sweden 12889 A 1388 1388
204 Sweden 12890 C 1388 1388
205 Sweden 12891 T 1388 1388
206 Sweden 12892 G 1388 1388
207 Sweden 12893 G 1388 1388
208 Sweden 12894 A 1388 1388
209 Sweden 12895 A 1388 1388
210 Sweden 12896 C 1388 1388
211 Sweden 12897 C 1388 1388
212 Sweden 12898 A 1388 1388
213 Sweden 12899 C 1388 1388
214 Sweden 12900 C 1388 1388
215 Sweden 12901 T 1388 1388
216 Sweden 12902 T 1388 1388
217 Sweden 12903 G 1388 1388
218 Sweden 12904 T 1388 1388
219 Sweden 12905 A 1388 1388
220 Sweden 12906 G 1388 1388
221 Sweden 12907 G 1388 1388
222 Sweden 12908 T 1388 1388
223 Sweden 12909 T 1388 1388
224 Sweden 12910 T 1388 1388
225 Sweden 12911 G T 1388 1387 Val4216Phe
226 Sweden 12912 T 1388 1388
227 Sweden 12913 T 1388 1388
228 Sweden 12914 A 1388 1388
229 Sweden 12915 C 1388 1388
230 Sweden 12916 A 1388 1388
231 Sweden 12917 G 1388 1388
232 Sweden 12918 A 1388 1388
233 Sweden 12919 C 1388 1388
234 Sweden 12920 A 1388 1388
235 Sweden 12921 C 1388 1388
236 Sweden 12922 A 1388 1388
237 Sweden 12923 C A 1388 1387 Pro4220Thr
238 Sweden 12924 C T 1388 1383 Pro4220Leu
239 Sweden 12925 T 1388 1388
240 Sweden 12926 A 1388 1388
241 Sweden 12927 A 1388 1388
242 Sweden 12928 A 1388 1388
243 Sweden 12929 G 1388 1388
244 Sweden 12930 G 1388 1388
245 Sweden 12931 T 1388 1388
246 Sweden 12932 C 1388 1388
247 Sweden 12933 C A 1388 1387 Pro4223His
248 Sweden 12934 T 1388 1388
249 Sweden 12935 A 1388 1388
250 Sweden 12936 A 1388 1388
251 Sweden 12937 A 1388 1388
252 Sweden 12938 G 1388 1388
253 Sweden 12939 T 1388 1388
254 Sweden 12940 G 1388 1388
255 Sweden 12941 A 1388 1388
256 Sweden 12942 A 1388 1388
257 Sweden 12943 G 1388 1388
258 Sweden 12944 T 1388 1388
259 Sweden 12945 A 1388 1388
260 Sweden 12946 T 1388 1388
261 Sweden 12947 T 1388 1388
262 Sweden 12948 T 1388 1388
263 Sweden 12949 A G 1388 1387 Leu4228Leu
264 Sweden 12950 T 1388 1388
265 Sweden 12951 A 1388 1388
266 Sweden 12952 C 1388 1388
267 Sweden 12953 T 1388 1388
268 Sweden 12954 T 1388 1388
269 Sweden 12955 T 1388 1388
270 Sweden 12956 A 1388 1388
271 Sweden 12957 T 1388 1388
272 Sweden 12958 T 1388 1388
273 Sweden 12959 A 1388 1388
274 Sweden 12960 A 1388 1388
275 Sweden 12961 A 1388 1388
276 Sweden 12962 G 1388 1388
277 Sweden 12963 G 1388 1388
278 Sweden 12964 A 1388 1388
279 Sweden 12965 T 1388 1388
280 Sweden 12966 T 1388 1388
281 Sweden 12967 A 1388 1388
282 Sweden 12968 A 1388 1388
283 Sweden 12969 A 1388 1388
284 Sweden 12970 C T 1388 1381 Asn4235Asn
285 Sweden 12971 A 1388 1388
286 Sweden 12972 A 1388 1388
287 Sweden 12973 C 1388 1388
288 Sweden 12974 C 1388 1388
289 Sweden 12975 T 1388 1388
290 Sweden 12976 A 1388 1388
291 Sweden 12977 A 1388 1388
292 Sweden 12978 A 1388 1388
293 Sweden 12979 T 1388 1388
294 Sweden 12980 A 1388 1388
295 Sweden 12981 G 1388 1388
296 Sweden 12982 A 1388 1388
297 Sweden 12983 G 1388 1388
298 Sweden 12984 G 1388 1388
299 Sweden 12985 T 1388 1388
300 Sweden 12986 A 1388 1388
301 Sweden 12987 T 1388 1388
302 Sweden 12988 G T 1388 1276 Met4241Ile
303 Sweden 12989 G 1388 1388
304 Sweden 12990 T 1388 1388
305 Sweden 12991 A 1388 1388
306 Sweden 12992 C 1388 1388
307 Sweden 12993 T 1388 1388
308 Sweden 12994 T 1388 1388
309 Sweden 12995 G 1388 1388
310 Sweden 12996 G 1388 1388
311 Sweden 12997 T 1388 1388
312 Sweden 12998 A 1388 1388
313 Sweden 12999 G 1388 1388
314 Sweden 13000 T 1388 1388
315 Sweden 13001 T 1388 1388
316 Sweden 13002 T 1388 1388
317 Sweden 13003 A 1388 1388
318 Sweden 13004 G 1388 1388
319 Sweden 13005 C 1388 1388
320 Sweden 13006 T 1388 1388
321 Sweden 13007 G 1388 1388
322 Sweden 13008 C 1388 1388
323 Sweden 13009 C 1388 1388
324 Sweden 13010 A 1388 1388
325 Sweden 13011 C T 1388 1376 Thr4249Ile
326 Sweden 13012 A 1388 1388
327 Sweden 13013 G 1388 1388
328 Sweden 13014 T 1388 1388
329 Sweden 13015 A 1388 1388
330 Sweden 13016 C 1388 1388
331 Sweden 13017 G 1388 1388
332 Sweden 13018 T 1388 1388
333 Sweden 13019 C T 1388 1387 Leu4252Leu
334 Sweden 13020 T 1388 1388
335 Sweden 13021 A 1388 1388
336 Sweden 13022 C 1388 1388
337 Sweden 13023 A 1388 1388
338 Sweden 13024 A 1388 1388