National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6             1                        
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Sri_Lanka 12686 A 55 55
1 Sri_Lanka 12687 A 55 55
2 Sri_Lanka 12688 T 55 55
3 Sri_Lanka 12689 A 55 55
4 Sri_Lanka 12690 A 55 55
5 Sri_Lanka 12691 T 55 55
6 Sri_Lanka 12692 G 55 55
7 Sri_Lanka 12693 A 55 55
8 Sri_Lanka 12694 G 55 55
9 Sri_Lanka 12695 C 55 55
10 Sri_Lanka 12696 T 55 55
11 Sri_Lanka 12697 T 55 55
12 Sri_Lanka 12698 A 55 55
13 Sri_Lanka 12699 G 55 55
14 Sri_Lanka 12700 T 55 55
15 Sri_Lanka 12701 C 55 55
16 Sri_Lanka 12702 C 55 55
17 Sri_Lanka 12703 T 55 55
18 Sri_Lanka 12704 G 55 55
19 Sri_Lanka 12705 T 55 55
20 Sri_Lanka 12706 T 55 55
21 Sri_Lanka 12707 G 55 55
22 Sri_Lanka 12708 C 55 55
23 Sri_Lanka 12709 A 55 55
24 Sri_Lanka 12710 C 55 55
25 Sri_Lanka 12711 T 55 55
26 Sri_Lanka 12712 A 55 55
27 Sri_Lanka 12713 C 55 55
28 Sri_Lanka 12714 G 55 55
29 Sri_Lanka 12715 A 55 55
30 Sri_Lanka 12716 C 55 55
31 Sri_Lanka 12717 A 55 55
32 Sri_Lanka 12718 G 55 55
33 Sri_Lanka 12719 A 55 53
34 Sri_Lanka 12720 T 55 53
35 Sri_Lanka 12721 G 55 53
36 Sri_Lanka 12722 T 55 53
37 Sri_Lanka 12723 C 55 53
38 Sri_Lanka 12724 T 55 54
39 Sri_Lanka 12725 T 55 54
40 Sri_Lanka 12726 G 55 54
41 Sri_Lanka 12727 T 55 54
42 Sri_Lanka 12728 G 55 54
43 Sri_Lanka 12729 C 55 54
44 Sri_Lanka 12730 T 55 53
45 Sri_Lanka 12731 G 55 53
46 Sri_Lanka 12732 C 55 53
47 Sri_Lanka 12733 C 55 53
48 Sri_Lanka 12734 G 55 53
49 Sri_Lanka 12735 G 55 53
50 Sri_Lanka 12736 T 55 53
51 Sri_Lanka 12737 A 55 53
52 Sri_Lanka 12738 C 55 54
53 Sri_Lanka 12739 T 55 54
54 Sri_Lanka 12740 A 55 54
55 Sri_Lanka 12741 C 55 55
56 Sri_Lanka 12742 A 55 55
57 Sri_Lanka 12743 C 55 55
58 Sri_Lanka 12744 A 55 55
59 Sri_Lanka 12745 A 55 55
60 Sri_Lanka 12746 A 55 55
61 Sri_Lanka 12747 C 55 55
62 Sri_Lanka 12748 T 55 55
63 Sri_Lanka 12749 G 55 55
64 Sri_Lanka 12750 C 55 55
65 Sri_Lanka 12751 T 55 55
66 Sri_Lanka 12752 T 55 55
67 Sri_Lanka 12753 G 55 55
68 Sri_Lanka 12754 C 55 55
69 Sri_Lanka 12755 A 55 54
70 Sri_Lanka 12756 C 55 54
71 Sri_Lanka 12757 T 55 54
72 Sri_Lanka 12758 G 55 54
73 Sri_Lanka 12759 A 55 54
74 Sri_Lanka 12760 T 56 55
75 Sri_Lanka 12761 G 58 58
76 Sri_Lanka 12762 A 58 58
77 Sri_Lanka 12763 C 58 58
78 Sri_Lanka 12764 A 58 58
79 Sri_Lanka 12765 A 58 58
80 Sri_Lanka 12766 T 58 58
81 Sri_Lanka 12767 G 58 58
82 Sri_Lanka 12768 C 58 58
83 Sri_Lanka 12769 G 58 58
84 Sri_Lanka 12770 T 58 58
85 Sri_Lanka 12771 T 58 58
86 Sri_Lanka 12772 A 58 58
87 Sri_Lanka 12773 G 58 58
88 Sri_Lanka 12774 C 58 58
89 Sri_Lanka 12775 T 58 58
90 Sri_Lanka 12776 T 58 58
91 Sri_Lanka 12777 A 58 58
92 Sri_Lanka 12778 C 58 58
93 Sri_Lanka 12779 T 58 58
94 Sri_Lanka 12780 A 58 58
95 Sri_Lanka 12781 C 58 58
96 Sri_Lanka 12782 A 58 58
97 Sri_Lanka 12783 A 58 58
98 Sri_Lanka 12784 C 58 58
99 Sri_Lanka 12785 A 58 58
100 Sri_Lanka 12786 C 58 58
101 Sri_Lanka 12787 A 58 58
102 Sri_Lanka 12788 A 58 58
103 Sri_Lanka 12789 C 58 58
104 Sri_Lanka 12790 A 58 58
105 Sri_Lanka 12791 A 58 58
106 Sri_Lanka 12792 A 58 56
107 Sri_Lanka 12793 G 58 56
108 Sri_Lanka 12794 G 58 56
109 Sri_Lanka 12795 G 58 56
110 Sri_Lanka 12796 A 58 56
111 Sri_Lanka 12797 G 58 56
112 Sri_Lanka 12798 G 58 56
113 Sri_Lanka 12799 T 58 56
114 Sri_Lanka 12800 A 58 50
115 Sri_Lanka 12801 G 58 49
116 Sri_Lanka 12802 G 58 48
117 Sri_Lanka 12803 T 58 48
118 Sri_Lanka 12804 T 58 47
119 Sri_Lanka 12805 T 58 47
120 Sri_Lanka 12806 G 58 47
121 Sri_Lanka 12807 T 58 46
122 Sri_Lanka 12808 A 58 46
123 Sri_Lanka 12809 C 58 45
124 Sri_Lanka 12810 T 58 45
125 Sri_Lanka 12811 T 58 45
126 Sri_Lanka 12812 G 58 45
127 Sri_Lanka 12813 C 58 45
128 Sri_Lanka 12814 A 58 45
129 Sri_Lanka 12815 C 58 45
130 Sri_Lanka 12816 T 58 45
131 Sri_Lanka 12817 G 58 44
132 Sri_Lanka 12818 T 58 44
133 Sri_Lanka 12819 T 58 47
134 Sri_Lanka 12820 A 58 46
135 Sri_Lanka 12821 T 58 45
136 Sri_Lanka 12822 C 58 45
137 Sri_Lanka 12823 C 58 45
138 Sri_Lanka 12824 G 58 45
139 Sri_Lanka 12825 A 58 45
140 Sri_Lanka 12826 T 58 45
141 Sri_Lanka 12827 T 58 45
142 Sri_Lanka 12828 T 58 47
143 Sri_Lanka 12829 A 58 58
144 Sri_Lanka 12830 C 58 58
145 Sri_Lanka 12831 A 58 58
146 Sri_Lanka 12832 G 58 58
147 Sri_Lanka 12833 G 58 58
148 Sri_Lanka 12834 A 58 58
149 Sri_Lanka 12835 T 58 58
150 Sri_Lanka 12836 T 58 58
151 Sri_Lanka 12837 T 58 58
152 Sri_Lanka 12838 G 58 58
153 Sri_Lanka 12839 A 58 58
154 Sri_Lanka 12840 A 58 57
155 Sri_Lanka 12841 A 58 57
156 Sri_Lanka 12842 T 58 57
157 Sri_Lanka 12843 G 58 57
158 Sri_Lanka 12844 G 58 57
159 Sri_Lanka 12845 G 58 57
160 Sri_Lanka 12846 C 58 57
161 Sri_Lanka 12847 T 58 57
162 Sri_Lanka 12848 A 58 57
163 Sri_Lanka 12849 G 58 57
164 Sri_Lanka 12850 A 58 57
165 Sri_Lanka 12851 T 58 57
166 Sri_Lanka 12852 T 59 59
167 Sri_Lanka 12853 C 59 59
168 Sri_Lanka 12854 C 59 59
169 Sri_Lanka 12855 C 59 59
170 Sri_Lanka 12856 T 59 59
171 Sri_Lanka 12857 A 59 59
172 Sri_Lanka 12858 A 59 59
173 Sri_Lanka 12859 G 59 59
174 Sri_Lanka 12860 A 59 59
175 Sri_Lanka 12861 G 59 59
176 Sri_Lanka 12862 T 59 59
177 Sri_Lanka 12863 G 59 59
178 Sri_Lanka 12864 A 59 58
179 Sri_Lanka 12865 T 59 58
180 Sri_Lanka 12866 G 59 58
181 Sri_Lanka 12867 G 59 58
182 Sri_Lanka 12868 A 59 58
183 Sri_Lanka 12869 A 59 58
184 Sri_Lanka 12870 C 59 58
185 Sri_Lanka 12871 T 59 58
186 Sri_Lanka 12872 G 59 58
187 Sri_Lanka 12873 G 59 58
188 Sri_Lanka 12874 T 59 59
189 Sri_Lanka 12875 A 59 59
190 Sri_Lanka 12876 C 59 59
191 Sri_Lanka 12877 T 59 59
192 Sri_Lanka 12878 A 59 59
193 Sri_Lanka 12879 T 59 59
194 Sri_Lanka 12880 C 59 59
195 Sri_Lanka 12881 T 59 59
196 Sri_Lanka 12882 A 59 59
197 Sri_Lanka 12883 T 59 59
198 Sri_Lanka 12884 A 59 59
199 Sri_Lanka 12885 C 59 59
200 Sri_Lanka 12886 A 59 59
201 Sri_Lanka 12887 G 59 59
202 Sri_Lanka 12888 A 59 59
203 Sri_Lanka 12889 A 59 59
204 Sri_Lanka 12890 C 59 59
205 Sri_Lanka 12891 T 59 59
206 Sri_Lanka 12892 G 59 59
207 Sri_Lanka 12893 G 59 59
208 Sri_Lanka 12894 A 59 59
209 Sri_Lanka 12895 A 59 59
210 Sri_Lanka 12896 C 59 59
211 Sri_Lanka 12897 C 59 59
212 Sri_Lanka 12898 A 59 59
213 Sri_Lanka 12899 C 59 59
214 Sri_Lanka 12900 C 59 59
215 Sri_Lanka 12901 T 59 59
216 Sri_Lanka 12902 T 59 59
217 Sri_Lanka 12903 G 59 59
218 Sri_Lanka 12904 T 59 58
219 Sri_Lanka 12905 A 59 58
220 Sri_Lanka 12906 G 59 58
221 Sri_Lanka 12907 G 59 59
222 Sri_Lanka 12908 T 60 60
223 Sri_Lanka 12909 T 60 60
224 Sri_Lanka 12910 T 60 60
225 Sri_Lanka 12911 G 60 60
226 Sri_Lanka 12912 T 60 60
227 Sri_Lanka 12913 T 60 60
228 Sri_Lanka 12914 A 60 60
229 Sri_Lanka 12915 C 60 60
230 Sri_Lanka 12916 A 60 60
231 Sri_Lanka 12917 G 60 60
232 Sri_Lanka 12918 A 60 60
233 Sri_Lanka 12919 C 60 60
234 Sri_Lanka 12920 A 60 60
235 Sri_Lanka 12921 C 59 59
236 Sri_Lanka 12922 A 59 59
237 Sri_Lanka 12923 C 58 58
238 Sri_Lanka 12924 C 58 57
239 Sri_Lanka 12925 T 58 57
240 Sri_Lanka 12926 A 58 58
241 Sri_Lanka 12927 A 58 58
242 Sri_Lanka 12928 A 58 58
243 Sri_Lanka 12929 G 58 58
244 Sri_Lanka 12930 G 58 58
245 Sri_Lanka 12931 T 58 58
246 Sri_Lanka 12932 C 58 58
247 Sri_Lanka 12933 C 58 58
248 Sri_Lanka 12934 T 58 58
249 Sri_Lanka 12935 A 58 58
250 Sri_Lanka 12936 A 58 58
251 Sri_Lanka 12937 A 58 58
252 Sri_Lanka 12938 G 58 58
253 Sri_Lanka 12939 T 58 58
254 Sri_Lanka 12940 G 58 58
255 Sri_Lanka 12941 A 58 58
256 Sri_Lanka 12942 A 58 58
257 Sri_Lanka 12943 G 58 58
258 Sri_Lanka 12944 T 58 58
259 Sri_Lanka 12945 A 58 58
260 Sri_Lanka 12946 T 58 58
261 Sri_Lanka 12947 T 58 58
262 Sri_Lanka 12948 T 58 58
263 Sri_Lanka 12949 A 58 58
264 Sri_Lanka 12950 T 58 58
265 Sri_Lanka 12951 A 58 58
266 Sri_Lanka 12952 C 58 58
267 Sri_Lanka 12953 T 58 58
268 Sri_Lanka 12954 T 58 58
269 Sri_Lanka 12955 T 58 58
270 Sri_Lanka 12956 A 58 58
271 Sri_Lanka 12957 T 58 58
272 Sri_Lanka 12958 T 58 58
273 Sri_Lanka 12959 A 58 58
274 Sri_Lanka 12960 A 58 58
275 Sri_Lanka 12961 A 58 58
276 Sri_Lanka 12962 G 58 58
277 Sri_Lanka 12963 G 58 58
278 Sri_Lanka 12964 A 58 58
279 Sri_Lanka 12965 T 58 58
280 Sri_Lanka 12966 T 58 58
281 Sri_Lanka 12967 A 58 58
282 Sri_Lanka 12968 A 58 58
283 Sri_Lanka 12969 A 58 58
284 Sri_Lanka 12970 C 58 58
285 Sri_Lanka 12971 A 58 58
286 Sri_Lanka 12972 A 58 58
287 Sri_Lanka 12973 C 58 58
288 Sri_Lanka 12974 C 58 58
289 Sri_Lanka 12975 T 58 58
290 Sri_Lanka 12976 A 58 58
291 Sri_Lanka 12977 A 58 58
292 Sri_Lanka 12978 A 58 58
293 Sri_Lanka 12979 T 58 58
294 Sri_Lanka 12980 A 58 58
295 Sri_Lanka 12981 G 58 58
296 Sri_Lanka 12982 A 58 58
297 Sri_Lanka 12983 G 58 58
298 Sri_Lanka 12984 G 58 58
299 Sri_Lanka 12985 T 58 58
300 Sri_Lanka 12986 A 58 58
301 Sri_Lanka 12987 T 58 58
302 Sri_Lanka 12988 G T 58 55 Met4241Ile
303 Sri_Lanka 12989 G 58 58
304 Sri_Lanka 12990 T 58 58
305 Sri_Lanka 12991 A 58 58
306 Sri_Lanka 12992 C 58 58
307 Sri_Lanka 12993 T 58 58
308 Sri_Lanka 12994 T 58 58
309 Sri_Lanka 12995 G 58 58
310 Sri_Lanka 12996 G 58 58
311 Sri_Lanka 12997 T 58 58
312 Sri_Lanka 12998 A 58 58
313 Sri_Lanka 12999 G 58 58
314 Sri_Lanka 13000 T 58 58
315 Sri_Lanka 13001 T 58 58
316 Sri_Lanka 13002 T 58 58
317 Sri_Lanka 13003 A 53 52
318 Sri_Lanka 13004 G 53 52
319 Sri_Lanka 13005 C 53 52
320 Sri_Lanka 13006 T 53 52
321 Sri_Lanka 13007 G 53 53
322 Sri_Lanka 13008 C 53 53
323 Sri_Lanka 13009 C 53 53
324 Sri_Lanka 13010 A 53 53
325 Sri_Lanka 13011 C 53 53
326 Sri_Lanka 13012 A 51 51
327 Sri_Lanka 13013 G 51 51
328 Sri_Lanka 13014 T 51 51
329 Sri_Lanka 13015 A 51 51
330 Sri_Lanka 13016 C 51 51
331 Sri_Lanka 13017 G 51 51
332 Sri_Lanka 13018 T 51 51
333 Sri_Lanka 13019 C 51 51
334 Sri_Lanka 13020 T 51 51
335 Sri_Lanka 13021 A 51 51
336 Sri_Lanka 13022 C 51 51
337 Sri_Lanka 13023 A 51 51
338 Sri_Lanka 13024 A 51 51